Variant report

Variant	rs73276783
Chromosome Location	chr8:103710964-103710965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103664274..103669352-chr8:103706016..103716856,15	MCF-7	breast:
2	chr8:103697587..103702025-chr8:103708356..103712921,6	MCF-7	breast:
3	chr8:103693701..103696201-chr8:103709941..103712706,2	MCF-7	breast:
4	chr8:103709537..103712892-chr8:103713255..103715584,4	K562	blood:
5	chr8:103710311..103712892-chr8:103713398..103715584,2	K562	blood:
6	chr8:103666427..103669955-chr8:103708195..103712106,4	K562	blood:
7	chr8:103666427..103669276-chr8:103709893..103712478,4	K562	blood:
8	chr8:103710324..103712575-chr8:103713030..103715974,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000250684	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58866287	1.00[AMR][1000 genomes]
rs60377289	1.00[AMR][1000 genomes]
rs60704591	1.00[AMR][1000 genomes]
rs73290800	1.00[AMR][1000 genomes]
rs73290801	1.00[AMR][1000 genomes]
rs73292529	1.00[AMR][1000 genomes]
rs73292581	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103705400-103714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr8:103710400-103711000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:103710400-103711200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:103710400-103711400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr8:103710400-103711600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr8:103710400-103711600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:103710400-103711600	Enhancers	K562	blood
8	chr8:103710400-103711800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:103710400-103713600	Enhancers	NHEK	skin
10	chr8:103710600-103711000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:103710600-103711000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103710600-103711200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:103710600-103711200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:103710600-103711200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:103710600-103711200	Enhancers	Esophagus	oesophagus
16	chr8:103710600-103711200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
17	chr8:103710600-103711200	Enhancers	HSMMtube	muscle
18	chr8:103710600-103711400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr8:103710600-103711400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:103710600-103711600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr8:103710600-103711600	Enhancers	H1 Cell Line	embryonic stem cell
22	chr8:103710600-103711600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr8:103710600-103711600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr8:103710600-103712000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr8:103710800-103711000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:103710800-103711200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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