Variant report

Variant	rs73276785
Chromosome Location	chr5:154184731-154184732
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:154184657-154185140	Hela-S3	cervix:	n/a	n/a
2	POLR2A	chr5:154184625-154185151	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr5:154182368-154186266	GM12891	blood:	n/a	n/a
4	POLR2A	chr5:154178876-154188576	K562	blood:	n/a	n/a
5	POLR2A	chr5:154184195-154184912	PFSK-1	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154182822..154185758-chr5:154236986..154239294,2	MCF-7	breast:
2	chr5:154135101..154137187-chr5:154183739..154185409,2	MCF-7	breast:

Variant related genes	Relation type
LARP1	TF binding region
ENSG00000170271	Chromatin interaction
ENSG00000155506	Chromatin interaction
ENSG00000155508	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57706249	1.00[AMR][1000 genomes]
rs61122839	1.00[AMR][1000 genomes]
rs73278808	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830521	chr5:154147567-154244266	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154164600-154188200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:154167000-154203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:154169200-154204200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr5:154169200-154204200	Strong transcription	Dnd41	blood
5	chr5:154169400-154186200	Strong transcription	Fetal Stomach	stomach
6	chr5:154169400-154188400	Strong transcription	NHEK	skin
7	chr5:154169400-154190400	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:154169400-154191000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:154169400-154191200	Strong transcription	Primary T cells from cord blood	blood
10	chr5:154169400-154191200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr5:154169400-154191400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:154169400-154192600	Strong transcription	Fetal Thymus	thymus
13	chr5:154169400-154194800	Strong transcription	K562	blood
14	chr5:154169400-154198200	Strong transcription	H9 Cell Line	embryonic stem cell
15	chr5:154169400-154198400	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr5:154169400-154198800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:154169400-154199000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:154169400-154199400	Strong transcription	Fetal Muscle Trunk	muscle
19	chr5:154169400-154200000	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:154169400-154200800	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr5:154169400-154201400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:154169400-154204000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:154169400-154204200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:154169400-154204200	Strong transcription	Duodenum Mucosa	Duodenum
25	chr5:154169400-154205800	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr5:154169600-154185800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:154169600-154185800	Strong transcription	Thymus	Thymus
28	chr5:154169600-154188400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr5:154169600-154188600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr5:154169600-154189200	Strong transcription	Primary hematopoietic stem cells	blood
31	chr5:154169600-154191200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr5:154169600-154191600	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr5:154169600-154192400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:154169600-154196400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr5:154169600-154199400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr5:154169600-154200000	Strong transcription	Fetal Muscle Leg	muscle
37	chr5:154169600-154202400	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr5:154169600-154204200	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr5:154169800-154189200	Strong transcription	Liver	Liver
40	chr5:154169800-154191000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:154169800-154191200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr5:154169800-154191400	Strong transcription	Brain Anterior Caudate	brain
43	chr5:154169800-154191600	Strong transcription	Primary B cells from cord blood	blood
44	chr5:154169800-154198200	Strong transcription	Fetal Brain Female	brain
45	chr5:154169800-154198600	Strong transcription	HMEC	breast
46	chr5:154170800-154201200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr5:154171000-154188600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr5:154171000-154201000	Strong transcription	HSMM	muscle
49	chr5:154171200-154193200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:154171400-154186800	Strong transcription	Fetal Kidney	kidney

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