Variant report

Variant	rs73276865
Chromosome Location	chr14:64324280-64324281
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64318382..64321162-chr14:64323828..64326705,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11847646	1.00[EUR][1000 genomes]
rs57245237	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59802429	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7144861	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145689	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276857	1.00[EUR][1000 genomes]
rs73276864	1.00[EUR][1000 genomes]
rs73276869	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73276873	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64321200-64327000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:64321200-64333800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:64321200-64334600	Weak transcription	Pancreas	Pancrea
4	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:64321400-64324800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr14:64321400-64324800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:64321400-64330600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:64321400-64331200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
10	chr14:64321600-64326200	Weak transcription	HSMMtube	muscle
11	chr14:64321600-64326800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:64322000-64324600	Enhancers	Stomach Mucosa	stomach
13	chr14:64322200-64327600	Weak transcription	Psoas Muscle	Psoas
14	chr14:64322400-64326600	Weak transcription	Gastric	stomach
15	chr14:64322400-64327800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:64322400-64334400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr14:64322600-64324400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr14:64322600-64325000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr14:64322600-64326200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:64322600-64327000	Weak transcription	Fetal Intestine Large	intestine
21	chr14:64322600-64331200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr14:64322600-64331200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr14:64322800-64324400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr14:64322800-64324400	Enhancers	Dnd41	blood
25	chr14:64322800-64325800	Weak transcription	Placenta	Placenta
26	chr14:64322800-64326800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr14:64322800-64329000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr14:64322800-64330000	Weak transcription	Fetal Kidney	kidney
29	chr14:64322800-64330000	Weak transcription	HepG2	liver
30	chr14:64322800-64330600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr14:64322800-64330800	Enhancers	Primary T cells fromperipheralblood	blood
32	chr14:64322800-64340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr14:64322800-64340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:64323000-64324600	Enhancers	GM12878-XiMat	blood
35	chr14:64323000-64326800	Weak transcription	Fetal Brain Female	brain
36	chr14:64323000-64326800	Weak transcription	Fetal Heart	heart
37	chr14:64323000-64327000	Weak transcription	Fetal Lung	lung
38	chr14:64323000-64327200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr14:64323000-64329000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr14:64323000-64330000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:64323000-64330200	Weak transcription	Primary T cells from cord blood	blood
42	chr14:64323000-64330400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr14:64323000-64332800	Weak transcription	Fetal Intestine Small	intestine
44	chr14:64323000-64333000	Weak transcription	Ovary	ovary
45	chr14:64323200-64325800	Weak transcription	Right Ventricle	heart
46	chr14:64323200-64326400	Weak transcription	Esophagus	oesophagus
47	chr14:64323200-64331200	Weak transcription	Right Atrium	heart
48	chr14:64323200-64334400	Weak transcription	Aorta	Aorta
49	chr14:64323200-64340200	Weak transcription	Left Ventricle	heart
50	chr14:64323200-64340400	Weak transcription	Spleen	Spleen

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