Variant report

Variant	rs73276954
Chromosome Location	chr14:67567523-67567524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:67563581..67565684-chr14:67566134..67568510,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10138851	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142297	1.00[AMR][1000 genomes]
rs10162298	1.00[AMR][1000 genomes]
rs17103801	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73273269	1.00[AMR][1000 genomes]
rs73274986	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525460	chr14:66851185-67626594	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	esv2829998	chr14:67103579-67626594	Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2763071	chr14:67284476-67597237	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv902058	chr14:67310195-67760538	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv902059	chr14:67352226-67760538	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	esv2751285	chr14:67364747-67886781	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv902060	chr14:67417083-67760538	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv1841498	chr14:67434470-67634318	Strong transcription Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1045518	chr14:67529049-67959582	Strong transcription Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:67534800-67576400	Weak transcription	Pancreas	Pancrea
2	chr14:67545200-67569600	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:67545200-67569800	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:67545200-67570400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:67545400-67572000	Weak transcription	Brain Substantia Nigra	brain
6	chr14:67548400-67590200	Weak transcription	Esophagus	oesophagus
7	chr14:67549200-67570800	Weak transcription	Psoas Muscle	Psoas
8	chr14:67549400-67569600	Weak transcription	Brain Anterior Caudate	brain
9	chr14:67549600-67568800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:67549600-67569600	Weak transcription	Aorta	Aorta
11	chr14:67550200-67571200	Weak transcription	Dnd41	blood
12	chr14:67551000-67589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:67551200-67568800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:67553600-67569400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr14:67553800-67569400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:67554400-67569400	Weak transcription	Fetal Brain Female	brain
17	chr14:67554600-67604200	Weak transcription	HMEC	breast
18	chr14:67555000-67571000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:67555400-67589600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:67555400-67589600	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr14:67557600-67568800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:67558600-67589600	Weak transcription	Right Ventricle	heart
23	chr14:67559000-67570800	Weak transcription	Brain Angular Gyrus	brain
24	chr14:67561400-67569000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr14:67561800-67570400	Weak transcription	Adipose Nuclei	Adipose
26	chr14:67562000-67568800	Weak transcription	Fetal Intestine Small	intestine
27	chr14:67562200-67578800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:67562600-67593800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:67563600-67589600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr14:67565800-67568800	Weak transcription	Ovary	ovary
31	chr14:67566200-67570600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr14:67567000-67568800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:67567000-67593200	Weak transcription	Lung	lung
34	chr14:67567200-67567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:67567200-67568000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:67567200-67570000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr14:67567200-67571000	Strong transcription	Liver	Liver
38	chr14:67567400-67567600	Strong transcription	Left Ventricle	heart
39	chr14:67567400-67568000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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