Variant report

Variant	rs73277024
Chromosome Location	chr14:69549705-69549706
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr14:69549543-69549941	T-47D	breast:	n/a	n/a
2	ESR1	chr14:69549583-69549939	T-47D	breast:	n/a	n/a
3	ESR1	chr14:69549498-69549851	ECC-1	luminal epithelium:	n/a	n/a
4	ESR1	chr14:69549548-69549838	ECC-1	luminal epithelium:	n/a	n/a
5	ESR1	chr14:69549486-69549903	ECC-1	luminal epithelium:	n/a	n/a
6	ESR1	chr14:69549538-69549853	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
DDX18P1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57166953	1.00[AMR][1000 genomes]
rs60135694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61491094	1.00[AMR][1000 genomes]
rs73275595	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73278991	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69518400-69557200	Weak transcription	Hela-S3	cervix
2	chr14:69522400-69556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69522400-69564800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:69523600-69550800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:69523600-69553400	Weak transcription	Brain Angular Gyrus	brain
6	chr14:69523600-69556400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:69524000-69557600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:69524800-69556600	Weak transcription	Fetal Brain Male	brain
9	chr14:69527000-69558200	Weak transcription	Esophagus	oesophagus
10	chr14:69528600-69550600	Weak transcription	Spleen	Spleen
11	chr14:69528600-69560200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr14:69528800-69550600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:69535600-69565200	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr14:69536000-69553200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:69536200-69556400	Weak transcription	K562	blood
16	chr14:69540000-69551400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:69540400-69560600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:69540800-69551600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr14:69541000-69550800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr14:69541000-69556200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:69541000-69556400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:69541200-69550200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:69541400-69553600	Weak transcription	Brain Substantia Nigra	brain
24	chr14:69541400-69559800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:69541600-69550000	Weak transcription	Colonic Mucosa	Colon
26	chr14:69541600-69556400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr14:69541800-69550800	Weak transcription	Brain Anterior Caudate	brain
28	chr14:69541800-69553800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr14:69542000-69550600	Weak transcription	Fetal Brain Female	brain
30	chr14:69542000-69553200	Weak transcription	Brain Germinal Matrix	brain
31	chr14:69542000-69554600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr14:69542200-69550000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr14:69542600-69570600	Strong transcription	Primary T cells from cord blood	blood
34	chr14:69543000-69559000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:69544400-69550800	Weak transcription	Lung	lung
36	chr14:69545200-69550600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr14:69545800-69559000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr14:69546000-69553400	Weak transcription	Aorta	Aorta
39	chr14:69546000-69563200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr14:69546200-69550000	Strong transcription	Primary B cells from cord blood	blood
41	chr14:69546200-69556400	Weak transcription	Gastric	stomach
42	chr14:69546200-69556400	Weak transcription	Right Ventricle	heart
43	chr14:69546200-69559000	Strong transcription	GM12878-XiMat	blood
44	chr14:69546200-69559200	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:69546200-69583000	Weak transcription	Psoas Muscle	Psoas
46	chr14:69546400-69550800	Weak transcription	Colon Smooth Muscle	Colon
47	chr14:69546400-69553400	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr14:69546400-69557600	Weak transcription	Pancreas	Pancrea
49	chr14:69546400-69558600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:69546600-69550600	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links