Variant report

Variant	rs73277540
Chromosome Location	chr14:64482690-64482691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34393543	1.00[AMR][1000 genomes]
rs73277546	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv902020	chr14:64434288-64506541	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64395000-64491000	Weak transcription	Psoas Muscle	Psoas
2	chr14:64419200-64489000	Weak transcription	Small Intestine	intestine
3	chr14:64442400-64491000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:64457000-64502000	Strong transcription	Placenta	Placenta
5	chr14:64457000-64519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:64458800-64490400	Weak transcription	Colonic Mucosa	Colon
7	chr14:64460000-64488000	Weak transcription	Pancreas	Pancrea
8	chr14:64460000-64513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:64460600-64495000	Weak transcription	NHDF-Ad	bronchial
10	chr14:64463200-64491000	Weak transcription	Fetal Brain Male	brain
11	chr14:64464000-64488600	Weak transcription	HUVEC	blood vessel
12	chr14:64466400-64490600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:64466600-64490400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:64466600-64513200	Weak transcription	NHEK	skin
15	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:64469200-64488000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:64469600-64518400	Weak transcription	HMEC	breast
19	chr14:64470000-64490600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:64470200-64488000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr14:64470400-64484400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr14:64470600-64487600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:64471800-64487000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr14:64471800-64488000	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr14:64471800-64489800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:64471800-64490800	Weak transcription	Spleen	Spleen
27	chr14:64471800-64505200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr14:64472000-64484200	Weak transcription	Fetal Kidney	kidney
29	chr14:64472000-64485400	Weak transcription	Primary B cells from cord blood	blood
30	chr14:64472200-64488000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr14:64473000-64515000	Weak transcription	Hela-S3	cervix
32	chr14:64474200-64484600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr14:64474400-64505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:64475000-64484200	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr14:64475000-64487800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:64475000-64488400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
38	chr14:64475600-64489600	Weak transcription	Lung	lung
39	chr14:64475600-64505600	Weak transcription	Esophagus	oesophagus
40	chr14:64475600-64518400	Weak transcription	Gastric	stomach
41	chr14:64476000-64487000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:64476800-64485000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr14:64477600-64487600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr14:64478600-64488000	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr14:64478800-64484200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:64478800-64484800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:64478800-64484800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:64478800-64492200	Weak transcription	Aorta	Aorta
49	chr14:64479000-64484400	Weak transcription	Primary T cells from cord blood	blood
50	chr14:64479000-64487200	Weak transcription	Adipose Nuclei	Adipose

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