Variant report

Variant	rs73279201
Chromosome Location	chr8:102588821-102588822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:102576536..102580094-chr8:102585816..102588883,4	MCF-7	breast:
2	chr8:102586663..102588864-chr8:102589452..102591832,2	MCF-7	breast:
3	chr8:102582322..102584576-chr8:102588630..102591641,3	MCF-7	breast:
4	chr8:102588119..102597900-chr8:102614552..102624670,18	MCF-7	breast:
5	chr8:102585772..102587387-chr8:102587401..102588904,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16867827	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824089	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58824748	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73281005	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891230	chr8:102569309-102604306	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102552200-102620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:102571000-102589600	Weak transcription	Gastric	stomach
3	chr8:102576000-102589600	Weak transcription	HMEC	breast
4	chr8:102582200-102592400	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:102583800-102596800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr8:102585200-102590400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:102585600-102589000	Enhancers	A549	lung
8	chr8:102585600-102595800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:102585800-102589000	Enhancers	Fetal Heart	heart
10	chr8:102585800-102589000	Enhancers	Stomach Mucosa	stomach
11	chr8:102585800-102589000	Genic enhancers	NHEK	skin
12	chr8:102585800-102592200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr8:102586000-102589000	Enhancers	Fetal Brain Female	brain
14	chr8:102587000-102589000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:102587000-102589400	Weak transcription	Placenta	Placenta
16	chr8:102587000-102589600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:102587000-102589600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:102587000-102589600	Weak transcription	Right Atrium	heart
19	chr8:102587000-102589600	Weak transcription	Right Ventricle	heart
20	chr8:102587000-102589600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr8:102587000-102590000	Weak transcription	Brain Angular Gyrus	brain
22	chr8:102587000-102590200	Weak transcription	Liver	Liver
23	chr8:102587000-102590200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr8:102587000-102594600	Weak transcription	Fetal Stomach	stomach
25	chr8:102587000-102597000	Weak transcription	Colonic Mucosa	Colon
26	chr8:102587200-102589400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:102587200-102590400	Weak transcription	Brain Germinal Matrix	brain
28	chr8:102587400-102589200	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:102587400-102589600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr8:102587400-102589600	Weak transcription	Esophagus	oesophagus
31	chr8:102587400-102589600	Weak transcription	Fetal Muscle Leg	muscle
32	chr8:102587400-102589600	Weak transcription	Left Ventricle	heart
33	chr8:102587400-102589600	Weak transcription	Pancreas	Pancrea
34	chr8:102587400-102589800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:102587400-102597000	Weak transcription	Lung	lung
36	chr8:102588200-102589600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr8:102588200-102590800	Enhancers	Ovary	ovary
38	chr8:102588400-102589600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr8:102588400-102590200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr8:102588400-102590400	Enhancers	Fetal Brain Male	brain
41	chr8:102588400-102594000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr8:102588600-102589000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:102588600-102589200	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr8:102588600-102590200	Weak transcription	Adipose Nuclei	Adipose
45	chr8:102588600-102595400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:102588800-102589000	Weak transcription	Fetal Intestine Small	intestine
47	chr8:102588800-102589600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr8:102588800-102589600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr8:102588800-102589600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr8:102588800-102589800	Weak transcription	Fetal Intestine Large	intestine

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