Variant report

Variant	rs7327965
Chromosome Location	chr13:30706900-30706901
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	13:30704196-30711562..13:30879528-30882380	H1-hESC	embryonic stem cell:	embryo
2	chr13:30706508..30707378-chr13:30732684..30733541,7	MCF-7	breast:
3	chr13:30689181..30689782-chr13:30706409..30706933,2	MCF-7	breast:
4	chr13:30698648..30700274-chr13:30705836..30708500,2	MCF-7	breast:
5	chr13:30706842..30707351-chr13:31376725..31377240,2	K562	blood:
6	chr13:30706898..30707420-chr13:30908752..30909540,2	MCF-7	breast:
7	chr13:30705361..30707918-chr13:31032869..31034442,2	K562	blood:
8	chr13:30706815..30707417-chr13:30908978..30909886,3	MCF-7	breast:
9	chr13:30706411..30707272-chr13:30908902..30909877,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000102781	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv981	chr13:30703159-30739838	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30694400-30707000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:30696400-30707000	Weak transcription	Thymus	Thymus
3	chr13:30700200-30707000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:30700200-30708000	Weak transcription	NH-A	brain
5	chr13:30700200-30717200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:30701400-30707000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr13:30701400-30707000	Weak transcription	NHDF-Ad	bronchial
8	chr13:30701600-30707000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:30701800-30707000	Weak transcription	Osteobl	bone
10	chr13:30702200-30707000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:30702200-30707000	Weak transcription	Gastric	stomach
12	chr13:30702200-30707000	Weak transcription	Left Ventricle	heart
13	chr13:30703200-30707000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr13:30703200-30707000	Weak transcription	GM12878-XiMat	blood
15	chr13:30704000-30707000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:30706400-30707800	Enhancers	Dnd41	blood
17	chr13:30706400-30709400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:30706600-30707000	Enhancers	Rectal Smooth Muscle	rectum
19	chr13:30706600-30707200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr13:30706600-30707200	Enhancers	Colon Smooth Muscle	Colon
21	chr13:30706600-30707200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
22	chr13:30706600-30707400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr13:30706600-30707400	Enhancers	Liver	Liver
24	chr13:30706600-30707600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr13:30706600-30707600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr13:30706600-30707600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
27	chr13:30706600-30708400	Enhancers	Fetal Thymus	thymus
28	chr13:30706600-30708800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr13:30706600-30708800	Enhancers	Stomach Mucosa	stomach
30	chr13:30706600-30709000	Enhancers	Brain Hippocampus Middle	brain
31	chr13:30706600-30709000	Enhancers	Brain Substantia Nigra	brain
32	chr13:30706600-30709200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr13:30706600-30709200	Enhancers	Fetal Intestine Small	intestine
34	chr13:30706800-30707000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:30706800-30707000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr13:30706800-30707000	Enhancers	Brain Cingulate Gyrus	brain
37	chr13:30706800-30707000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
38	chr13:30706800-30707000	Enhancers	Colonic Mucosa	Colon
39	chr13:30706800-30707000	Enhancers	Duodenum Mucosa	Duodenum
40	chr13:30706800-30707000	Active TSS	Fetal Brain Female	brain
41	chr13:30706800-30707000	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr13:30706800-30707000	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr13:30706800-30707000	Active TSS	Stomach Smooth Muscle	stomach
44	chr13:30706800-30707200	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr13:30706800-30707200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
46	chr13:30706800-30707200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr13:30706800-30707200	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr13:30706800-30707200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr13:30706800-30707200	Enhancers	Fetal Brain Male	brain
50	chr13:30706800-30707200	Active TSS	HepG2	liver

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