Variant report

Variant	rs73279688
Chromosome Location	chr17:33857608-33857609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4459595	0.81[AFR][1000 genomes]
rs57157479	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61483053	0.84[AFR][1000 genomes]
rs8077228	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
7	esv3328966	chr17:33856439-33858587	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33850600-33857800	Weak transcription	Fetal Lung	lung
2	chr17:33851400-33862600	Weak transcription	Spleen	Spleen
3	chr17:33851600-33860600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr17:33851800-33857800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr17:33856800-33860200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:33857000-33858000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:33857000-33858600	Genic enhancers	Dnd41	blood
8	chr17:33857000-33860000	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr17:33857600-33857800	Enhancers	Primary T cells from cord blood	blood
10	chr17:33857600-33857800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:33857600-33857800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr17:33857600-33858000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr17:33857600-33858000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr17:33857600-33858000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr17:33857600-33858000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr17:33857600-33858000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr17:33857600-33858000	ZNF genes & repeats	GM12878-XiMat	blood
18	chr17:33857600-33858200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr17:33857600-33858200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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