Variant report

Variant	rs73279886
Chromosome Location	chr7:21922906-21922907
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10238697	0.92[EUR][1000 genomes]
rs62445887	1.00[EUR][1000 genomes]
rs6958820	0.93[EUR][1000 genomes]
rs6976590	0.93[EUR][1000 genomes]
rs73279884	0.92[EUR][1000 genomes]
rs73281732	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1027453	chr7:21918474-21982448	Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21907400-21937200	Weak transcription	Fetal Thymus	thymus
2	chr7:21908400-21936600	Weak transcription	Primary T cells from cord blood	blood
3	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart
4	chr7:21910200-21925200	Weak transcription	Fetal Heart	heart
5	chr7:21910200-21925400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr7:21911200-21938400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:21916400-21933800	Weak transcription	Thymus	Thymus
8	chr7:21916800-21927400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:21916800-21935000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:21916800-21936600	Weak transcription	Primary B cells from cord blood	blood
11	chr7:21917000-21925600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:21917000-21936600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:21917000-21938400	Weak transcription	Fetal Intestine Small	intestine
14	chr7:21917800-21926400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:21922000-21926400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:21922600-21924400	Enhancers	NHEK	skin
17	chr7:21922800-21923000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:21922800-21923200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:21922800-21923400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links