Variant report

Variant	rs73280489
Chromosome Location	chr14:68371815-68371816
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17104753	1.00[AFR][1000 genomes]
rs33929366	1.00[AFR][1000 genomes]
rs60059053	0.87[AFR][1000 genomes]
rs73280453	0.87[AFR][1000 genomes]
rs73280460	0.87[AFR][1000 genomes]
rs73280462	0.87[AFR][1000 genomes]
rs73280485	1.00[AFR][1000 genomes]
rs73280488	1.00[AFR][1000 genomes]
rs73280494	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68364200-68374000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:68365800-68374800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:68368200-68374600	Weak transcription	Ovary	ovary
4	chr14:68368400-68382200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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