Variant report
| Variant | rs73280763 |
|---|---|
| Chromosome Location | chr12:46688034-46688035 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:46661928..46664685-chr12:46687734..46689445,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111371 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs7311450 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280714 | 0.84[AFR][1000 genomes] |
| rs73280725 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280729 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280732 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280735 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73280802 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73282505 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832398 | chr12:46611692-46825530 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 181 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
