Variant report

Variant	rs732821
Chromosome Location	chr13:47472879-47472880
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1328684	0.89[LWK][hapmap];0.84[MKK][hapmap]
rs1928040	0.81[CEU][hapmap]
rs4142900	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs4941573	0.85[CEU][hapmap]
rs4941575	0.85[CEU][hapmap]
rs6311	0.85[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6313	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs6561336	0.81[CEU][hapmap]
rs731245	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9526246	0.88[CEU][hapmap]
rs9534513	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs732821	GTF2F2	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47471200-47473200	Weak transcription	Pancreas	Pancrea
2	chr13:47471400-47474000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:47471600-47474000	Weak transcription	Brain Hippocampus Middle	brain
4	chr13:47471600-47477600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr13:47471600-47477600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr13:47471800-47474000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr13:47472000-47474000	Weak transcription	Brain Anterior Caudate	brain
8	chr13:47472400-47473800	Weak transcription	Brain Angular Gyrus	brain
9	chr13:47472400-47474000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr13:47472400-47474000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:47472400-47477600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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