Variant report

Variant	rs73282118
Chromosome Location	chr14:70981522-70981523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10129596	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10129662	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10130982	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10142880	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145399	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145603	1.00[AMR][1000 genomes]
rs10146168	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10149881	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10162557	1.00[AMR][1000 genomes]
rs13379168	1.00[AMR][1000 genomes]
rs28749890	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773801	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59125209	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7150080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7153652	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7159767	1.00[AMR][1000 genomes]
rs73282142	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282156	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282164	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282201	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73283954	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73286047	1.00[AMR][1000 genomes]
rs73286048	1.00[AMR][1000 genomes]
rs74062732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8009390	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9323543	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr14:70965200-70982000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:70968600-70989400	Weak transcription	Pancreas	Pancrea
5	chr14:70973400-70985200	Weak transcription	Left Ventricle	heart
6	chr14:70975800-70990000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr14:70978200-70986600	Weak transcription	Liver	Liver
8	chr14:70978600-70985000	Weak transcription	Aorta	Aorta
9	chr14:70978800-70983000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:70978800-70988600	Weak transcription	Ovary	ovary
11	chr14:70979200-70986800	Weak transcription	Primary T cells from cord blood	blood
12	chr14:70980000-70989400	Weak transcription	Brain Angular Gyrus	brain
13	chr14:70980400-70982600	Enhancers	Primary hematopoietic stem cells	blood
14	chr14:70980400-70982800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:70980400-70983200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr14:70980600-70982400	Enhancers	Dnd41	blood
17	chr14:70980800-70981800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:70980800-70982000	Enhancers	HSMM	muscle
19	chr14:70981000-70989400	Weak transcription	Brain Substantia Nigra	brain
20	chr14:70981000-70989600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr14:70981200-70994400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:70981400-70981600	Enhancers	Monocytes-CD14+_RO01746	blood

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