Variant report

Variant	rs73282511
Chromosome Location	chr7:26969123-26969124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs60099475	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61114742	1.00[AMR][1000 genomes]
rs73280789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282549	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26960400-26969600	Weak transcription	NHEK	skin
2	chr7:26968000-26971000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:26968200-26970800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:26968400-26969200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:26968400-26970200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr7:26968800-26969400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:26968800-26969800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:26969000-26970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:26969000-26970000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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