Variant report

Variant	rs73282575
Chromosome Location	chr7:27072388-27072389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27071114..27072708-chr7:27126763..27129361,2	K562	blood:
2	7:27071265-27080138..7:27181770-27195105	K562	blood:

Variant related genes	Relation type
ENSG00000254369	Chromatin interaction
ENSG00000273433	Chromatin interaction
ENSG00000106004	Chromatin interaction
ENSG00000106006	Chromatin interaction
ENSG00000105997	Chromatin interaction
ENSG00000272801	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10230578	1.00[AMR][1000 genomes]
rs17472406	1.00[AMR][1000 genomes]
rs17472448	1.00[AMR][1000 genomes]
rs2158217	1.00[AMR][1000 genomes]
rs60368266	1.00[AMR][1000 genomes]
rs73280787	1.00[AMR][1000 genomes]
rs73282602	1.00[AMR][1000 genomes]
rs73290349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
2	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
3	nsv1018709	chr7:26990384-27216552	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
4	nsv538806	chr7:26990384-27216552	Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	140 gene(s)	inside rSNPs	diseases
5	nsv967485	chr7:27066773-27082518	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27070200-27072800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr7:27070200-27072800	Enhancers	NHEK	skin
3	chr7:27070200-27073000	Enhancers	HSMMtube	muscle
4	chr7:27070400-27072800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr7:27070800-27072600	Weak transcription	Fetal Muscle Leg	muscle
6	chr7:27071000-27072600	Enhancers	Fetal Heart	heart
7	chr7:27071000-27072800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:27071000-27072800	Enhancers	Fetal Kidney	kidney
9	chr7:27071000-27073200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:27071200-27072600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr7:27071200-27073000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:27071200-27073000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr7:27071200-27073200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:27071400-27072800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:27071400-27073000	Enhancers	HMEC	breast
16	chr7:27071600-27072400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr7:27071600-27072600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr7:27071600-27072800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:27071600-27072800	Enhancers	NHLF	lung
20	chr7:27071800-27072400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr7:27071800-27072800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:27071800-27072800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr7:27071800-27072800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr7:27071800-27072800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:27071800-27072800	Enhancers	NHDF-Ad	bronchial
26	chr7:27071800-27073000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr7:27071800-27073000	Enhancers	A549	lung
28	chr7:27071800-27073600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr7:27071800-27074000	Weak transcription	Adipose Nuclei	Adipose
30	chr7:27072000-27072400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:27072000-27072800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:27072000-27073000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:27072000-27073200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:27072200-27072800	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links