Variant report
| Variant | rs73283331 |
|---|---|
| Chromosome Location | chr14:70211131-70211132 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:70206029..70208107-chr14:70210614..70212846,2 | MCF-7 | breast: | |
| 2 | chr14:70209618..70212436-chr14:70221216..70223040,2 | MCF-7 | breast: | |
| 3 | chr14:70202452..70213184-chr14:70231962..70238183,25 | MCF-7 | breast: | |
| 4 | chr14:70210188..70218336-chr14:70231974..70235461,17 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000100650 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10144568 | 1.00[AMR][1000 genomes] |
| rs10149777 | 1.00[AMR][1000 genomes] |
| rs10162401 | 1.00[AMR][1000 genomes] |
| rs58290149 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58365129 | 1.00[AMR][1000 genomes] |
| rs60163156 | 1.00[AMR][1000 genomes] |
| rs61164981 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73283353 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73285210 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv456336 | chr14:70081956-70574149 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| 2 | nsv565007 | chr14:70081956-70574149 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
