Variant report

Variant	rs73283563
Chromosome Location	chr12:12150614-12150615
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73283568	0.89[AFR][1000 genomes]
rs74061011	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12144600-12151400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:12146800-12161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:12148400-12155400	Weak transcription	Right Atrium	heart
4	chr12:12149400-12152000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:12149600-12150800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr12:12149800-12150800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr12:12150000-12151000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr12:12150400-12151800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr12:12150600-12151200	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr12:12150600-12151600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr12:12150600-12151800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr12:12150600-12151800	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:12150600-12153200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links