Variant report

Variant	rs73284095
Chromosome Location	chr12:45034580-45034581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1376128	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1377000	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55815562	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55876404	1.00[AMR][1000 genomes]
rs57006455	1.00[AMR][1000 genomes]
rs58229687	1.00[AMR][1000 genomes]
rs59701515	1.00[AMR][1000 genomes]
rs60346357	1.00[AMR][1000 genomes]
rs60804250	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61323848	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61464392	1.00[AMR][1000 genomes]
rs61577923	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276096	1.00[AMR][1000 genomes]
rs73276098	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73284076	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287723	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74079137	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74079148	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45004800-45034800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr12:45004800-45043200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr12:45005000-45044200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:45015000-45048400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:45023400-45055600	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr12:45026000-45039400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr12:45031600-45035000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45031600-45059200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr12:45032400-45034600	Weak transcription	Fetal Lung	lung
10	chr12:45032600-45034800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr12:45033800-45034600	Weak transcription	Fetal Brain Male	brain
12	chr12:45034000-45035400	Enhancers	Fetal Stomach	stomach
13	chr12:45034200-45034800	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links