Variant report

Variant	rs73284450
Chromosome Location	chr17:17274486-17274487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57109756	1.00[AMR][1000 genomes]
rs57556535	1.00[AMR][1000 genomes]
rs57593626	1.00[AMR][1000 genomes]
rs7223497	1.00[AMR][1000 genomes]
rs73284404	1.00[AMR][1000 genomes]
rs73284407	1.00[AMR][1000 genomes]
rs73284438	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8066326	1.00[AMR][1000 genomes]
rs8067652	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8068152	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8071718	1.00[AMR][1000 genomes]
rs8071972	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
3	esv275128	chr17:17269758-17275754	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17267800-17279400	Weak transcription	Right Ventricle	heart
2	chr17:17270400-17278800	Weak transcription	Right Atrium	heart
3	chr17:17272800-17275200	Enhancers	Fetal Intestine Large	intestine
4	chr17:17273400-17274600	Weak transcription	Fetal Intestine Small	intestine
5	chr17:17273600-17279400	Weak transcription	Osteobl	bone
6	chr17:17274200-17275000	Weak transcription	Fetal Thymus	thymus
7	chr17:17274200-17275200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr17:17274200-17282200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr17:17274400-17274800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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