Variant report

Variant	rs73285203
Chromosome Location	chr14:70243196-70243197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70192186..70194321-chr14:70242720..70244369,2	K562	blood:
2	chr14:70240748..70243756-chr14:70261523..70264919,3	MCF-7	breast:
3	chr14:70212083..70214365-chr14:70241521..70243626,2	MCF-7	breast:
4	chr14:70163123..70165653-chr14:70241721..70243677,2	K562	blood:
5	chr10:115698662..115701586-chr14:70242840..70245022,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100652	Chromatin interaction
ENSG00000100650	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73283370	0.82[AFR][1000 genomes]
rs73283382	0.90[AFR][1000 genomes]
rs73283396	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70235400-70248200	Strong transcription	Fetal Muscle Trunk	muscle
2	chr14:70235600-70244600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:70235600-70246200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:70235600-70247000	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr14:70235800-70244200	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:70235800-70244400	Genic enhancers	Primary T helper cells fromperipheralblood	blood
7	chr14:70235800-70246200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:70235800-70246400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:70235800-70246600	Strong transcription	HSMMtube	muscle
10	chr14:70235800-70246800	Strong transcription	Primary hematopoietic stem cells	blood
11	chr14:70235800-70248800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:70235800-70249200	Strong transcription	HSMM	muscle
13	chr14:70236000-70245400	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr14:70236000-70247000	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:70236000-70247600	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr14:70236000-70248800	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr14:70236400-70246400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:70236400-70248800	Strong transcription	Primary B cells from cord blood	blood
19	chr14:70236600-70244800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr14:70236600-70246000	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr14:70236600-70247200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:70236600-70248200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr14:70236600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:70236600-70248200	Strong transcription	HMEC	breast
25	chr14:70236600-70248400	Strong transcription	Fetal Lung	lung
26	chr14:70236600-70249400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:70236800-70245400	Strong transcription	NHDF-Ad	bronchial
28	chr14:70236800-70246200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:70236800-70246200	Strong transcription	Fetal Muscle Leg	muscle
30	chr14:70236800-70246400	Strong transcription	Fetal Stomach	stomach
31	chr14:70236800-70246600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr14:70236800-70247200	Strong transcription	NH-A	brain
33	chr14:70236800-70247800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:70236800-70248000	Weak transcription	Right Atrium	heart
35	chr14:70236800-70248200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:70236800-70248400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:70236800-70248600	Strong transcription	Fetal Brain Female	brain
38	chr14:70236800-70248800	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr14:70236800-70249000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr14:70236800-70249000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr14:70237000-70253200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:70237200-70247000	Strong transcription	Osteobl	bone
43	chr14:70237200-70247400	Strong transcription	Muscle Satellite Cultured Cells	--
44	chr14:70237200-70248400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr14:70237400-70248800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr14:70237600-70244800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
47	chr14:70237600-70246600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr14:70237600-70246800	Weak transcription	Fetal Heart	heart
49	chr14:70237600-70247200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:70237600-70248200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links