Variant report

Variant	rs73285281
Chromosome Location	chr7:26401296-26401297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:26401160-26401678	MCF-7	breast:	n/a	chr7:26401522-26401529
2	JUND	chr7:26401179-26401764	T-47D	breast:	n/a	n/a
3	GATA3	chr7:26401216-26401654	T-47D	breast:	n/a	chr7:26401522-26401529
4	SIN3AK20	chr7:26401157-26401675	MCF-7	breast:	n/a	n/a
5	GATA3	chr7:26401185-26401614	SH-SY5Y	brain:	n/a	chr7:26401522-26401529
6	GATA3	chr7:26401241-26401689	T-47D	breast:	n/a	chr7:26401522-26401529

No.	Distal block	Cell Line	Cell type
1	chr7:26389446..26391389-chr7:26400125..26402977,3	K562	blood:
2	chr7:26234108..26236318-chr7:26400894..26402821,2	MCF-7	breast:
3	chr7:26238011..26242916-chr7:26400117..26407916,12	MCF-7	breast:
4	chr7:26389556..26392091-chr7:26400125..26403853,4	K562	blood:
5	chr7:26238981..26241907-chr7:26399075..26401341,3	K562	blood:

Variant related genes	Relation type
SNX10	TF binding region
ENSG00000122565	Chromatin interaction
ENSG00000122566	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58876328	1.00[AMR][1000 genomes]
rs60290224	1.00[AMR][1000 genomes]
rs60362041	1.00[AMR][1000 genomes]
rs6958604	1.00[AMR][1000 genomes]
rs73285206	1.00[AMR][1000 genomes]
rs73285285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
2	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:26386600-26405200	Weak transcription	Thymus	Thymus
7	chr7:26387400-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr7:26387800-26409400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:26388000-26409400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:26388200-26404600	Weak transcription	Dnd41	blood
11	chr7:26388200-26405000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:26388800-26402600	Weak transcription	Liver	Liver
13	chr7:26388800-26405200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:26389800-26402600	Weak transcription	Pancreas	Pancrea
16	chr7:26390200-26405000	Weak transcription	Primary T cells from cord blood	blood
17	chr7:26391200-26404600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr7:26392000-26404600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:26397000-26409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr7:26397200-26404600	Weak transcription	Fetal Intestine Small	intestine
21	chr7:26397400-26403600	Weak transcription	Fetal Intestine Large	intestine
22	chr7:26397400-26405200	Weak transcription	Fetal Thymus	thymus
23	chr7:26397600-26402400	Weak transcription	HepG2	liver
24	chr7:26397600-26405000	Weak transcription	Spleen	Spleen
25	chr7:26398600-26415400	Weak transcription	HMEC	breast
26	chr7:26400200-26403200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr7:26400400-26403600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:26400600-26402600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:26400600-26404200	Weak transcription	GM12878-XiMat	blood
30	chr7:26400600-26405200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:26400800-26401800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:26400800-26402400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:26400800-26403000	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr7:26401000-26401400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr7:26401000-26404600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:26401200-26404400	Weak transcription	Primary B cells from cord blood	blood

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