Variant report

Variant	rs732854
Chromosome Location	chr13:52417727-52417728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs61112030	0.81[AFR][1000 genomes]
rs74085838	1.00[AMR][1000 genomes]
rs9591434	1.00[AMR][1000 genomes]
rs9591435	1.00[AMR][1000 genomes]
rs9591436	1.00[AMR][1000 genomes]
rs9596590	1.00[AMR][1000 genomes]
rs9596591	1.00[AMR][1000 genomes]
rs9596592	1.00[AMR][1000 genomes]
rs9596593	1.00[AMR][1000 genomes]
rs9596594	1.00[AMR][1000 genomes]
rs9630340	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530718	chr13:52291802-52832752	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv933424	chr13:52293482-52507732	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1044310	chr13:52321564-52643924	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1050117	chr13:52325116-52643924	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
6	nsv900081	chr13:52406404-52426096	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52393600-52418600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:52401600-52419200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr13:52409200-52419200	Weak transcription	Right Atrium	heart
4	chr13:52413200-52417800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:52414000-52418800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:52415600-52419000	Weak transcription	K562	blood
7	chr13:52416400-52418000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:52416800-52418800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr13:52416800-52419600	Active TSS	Brain Anterior Caudate	brain
10	chr13:52417000-52418800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr13:52417400-52418000	Enhancers	Brain Substantia Nigra	brain
12	chr13:52417400-52418200	Active TSS	Primary B cells from cord blood	blood
13	chr13:52417400-52418200	Enhancers	Brain Cingulate Gyrus	brain
14	chr13:52417600-52417800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:52417600-52418000	Enhancers	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links