Variant report

Variant	rs732855
Chromosome Location	chr7:7911371-7911372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:7900013..7901798-chr7:7910728..7913305,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10241098	0.96[ASN][1000 genomes]
rs10255556	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10255802	0.96[ASN][1000 genomes]
rs10255964	0.96[ASN][1000 genomes]
rs12665898	0.97[ASN][1000 genomes]
rs12668141	0.97[ASN][1000 genomes]
rs12668597	0.97[ASN][1000 genomes]
rs13438161	0.96[ASN][1000 genomes]
rs13438763	0.96[ASN][1000 genomes]
rs2159831	0.86[ASN][1000 genomes]
rs28419778	0.95[ASN][1000 genomes]
rs34174547	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6463741	0.97[ASN][1000 genomes]
rs6954729	0.97[ASN][1000 genomes]
rs6954739	0.97[ASN][1000 genomes]
rs6958752	0.97[ASN][1000 genomes]
rs6959805	0.97[ASN][1000 genomes]
rs6974654	0.97[ASN][1000 genomes]
rs6974658	0.97[ASN][1000 genomes]
rs6979457	0.97[ASN][1000 genomes]
rs887702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	nsv1027123	chr7:7870047-7926288	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv1793003	chr7:7902171-7911371	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs732855	MMD2	cis	cerebellum	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7895400-7918000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:7897200-7923200	Weak transcription	Psoas Muscle	Psoas
3	chr7:7897200-7942400	Weak transcription	Aorta	Aorta
4	chr7:7901200-7915600	Weak transcription	Gastric	stomach
5	chr7:7907200-7911400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:7907400-7911400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:7907800-7915200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:7908000-7911600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:7908000-7912000	Enhancers	Brain Germinal Matrix	brain
10	chr7:7908000-7919400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr7:7908200-7918800	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:7908200-7921200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:7908400-7911400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:7908800-7911400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:7909000-7915600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:7909000-7922600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr7:7909200-7911400	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:7909400-7912800	Weak transcription	Primary T cells from cord blood	blood
19	chr7:7909400-7922400	Weak transcription	Primary B cells from cord blood	blood
20	chr7:7909600-7924000	Weak transcription	Fetal Intestine Small	intestine
21	chr7:7909600-7942400	Weak transcription	Left Ventricle	heart
22	chr7:7910200-7911400	Enhancers	H1 Cell Line	embryonic stem cell
23	chr7:7910400-7916000	Weak transcription	Brain Hippocampus Middle	brain
24	chr7:7910600-7913400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:7910600-7918000	Weak transcription	Right Atrium	heart
26	chr7:7910800-7911400	Weak transcription	Fetal Thymus	thymus
27	chr7:7910800-7914400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:7911000-7911400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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