Variant report

Variant	rs73285710
Chromosome Location	chr12:12172149-12172150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57170747	0.92[AFR][1000 genomes]
rs60058224	0.81[AFR][1000 genomes]
rs61086864	0.95[AFR][1000 genomes]
rs73283566	0.85[AFR][1000 genomes]
rs73285714	0.81[AFR][1000 genomes]
rs73285715	0.95[AFR][1000 genomes]
rs73285722	0.81[AFR][1000 genomes]
rs73285733	0.90[AFR][1000 genomes]
rs73285757	0.85[AFR][1000 genomes]
rs73285771	0.85[AFR][1000 genomes]
rs73285773	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12164600-12172600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr12:12164800-12179800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:12168000-12172600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr12:12168800-12172200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr12:12169200-12172200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr12:12169400-12172200	Enhancers	Fetal Heart	heart
7	chr12:12170000-12172200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:12170000-12176800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr12:12170400-12175600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr12:12170600-12173600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr12:12170600-12176400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:12170600-12177600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:12170600-12177800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:12170800-12176400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:12170800-12179200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr12:12171000-12173400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:12171000-12173600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr12:12171200-12176400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr12:12171200-12185400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr12:12171400-12174600	Weak transcription	GM12878-XiMat	blood
21	chr12:12171400-12175400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:12171400-12175400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:12171400-12185200	Weak transcription	Spleen	Spleen
24	chr12:12171600-12175400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr12:12171600-12175400	Weak transcription	Fetal Thymus	thymus
26	chr12:12171800-12175800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr12:12171800-12185000	Weak transcription	Esophagus	oesophagus
28	chr12:12172000-12172200	Enhancers	Thymus	Thymus
29	chr12:12172000-12172400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr12:12172000-12172400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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