Variant report

Variant	rs73285994
Chromosome Location	chr12:43242331-43242332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11832448	0.86[AFR][1000 genomes]
rs11832965	0.88[AFR][1000 genomes]
rs11833425	0.88[AFR][1000 genomes]
rs11834842	0.86[AFR][1000 genomes]
rs11835041	0.88[AFR][1000 genomes]
rs11837032	0.86[AFR][1000 genomes]
rs1915366	0.88[AFR][1000 genomes]
rs56785148	0.86[AFR][1000 genomes]
rs57471025	0.86[AFR][1000 genomes]
rs57908394	0.86[AFR][1000 genomes]
rs59960276	0.86[AFR][1000 genomes]
rs60312082	0.88[AFR][1000 genomes]
rs61708650	0.86[AFR][1000 genomes]
rs66528023	0.88[AFR][1000 genomes]
rs66532738	0.88[AFR][1000 genomes]
rs73125867	0.88[AFR][1000 genomes]
rs73132746	0.86[AFR][1000 genomes]
rs73285961	0.95[AFR][1000 genomes]
rs73285991	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73286000	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73287807	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73287819	0.88[AFR][1000 genomes]
rs73287821	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044790	chr12:42672255-43344184	Enhancers Bivalent Enhancer Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv541483	chr12:42672255-43344184	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
3	nsv558749	chr12:43180190-43275097	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:43220000-43243000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:43241200-43252400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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