Variant report

Variant	rs73286096
Chromosome Location	chr14:71110034-71110035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:27)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:27 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:71107408-71111056	GM12878	blood:	n/a	n/a
2	GATA3	chr14:71109599-71110062	T-47D	breast:	n/a	n/a
3	POLR2A	chr14:71107519-71111057	GM19099	blood:	n/a	n/a
4	GATA3	chr14:71109415-71110109	T-47D	breast:	n/a	n/a
5	POLR2A	chr14:71107559-71110560	GM18505	blood:	n/a	n/a
6	POLR2A	chr14:71108798-71110422	GM12892	blood:	n/a	n/a
7	POLR2A	chr14:71107578-71110550	GM18526	blood:	n/a	n/a
8	POLR2A	chr14:71107586-71110556	GM18951	blood:	n/a	n/a
9	FOXM1	chr14:71109187-71110171	GM12878	blood:	n/a	n/a
10	MTA3	chr14:71109186-71110091	GM12878	blood:	n/a	n/a
11	POLR2A	chr14:71107571-71110585	GM15510	blood:	n/a	n/a
12	MAX	chr14:71109482-71110712	GM12878	blood:	n/a	n/a
13	MTA3	chr14:71108881-71110467	GM12878	blood:	n/a	n/a
14	GATA3	chr14:71109691-71110238	SH-SY5Y	brain:	n/a	n/a
15	WRNIP1	chr14:71109421-71111402	GM12878	blood:	n/a	n/a
16	POLR2A	chr14:71108852-71110039	GM12892	blood:	n/a	n/a
17	CHD2	chr14:71109049-71110062	GM12878	blood:	n/a	n/a
18	POLR2A	chr14:71107613-71110518	GM19193	blood:	n/a	n/a
19	RUNX3	chr14:71109023-71110056	GM12878	blood:	n/a	n/a
20	SIN3A	chr14:71107108-71110474	H1-hESC	embryonic stem cell:	n/a	chr14:71109567-71109576
21	MXI1	chr14:71109362-71110454	GM12878	blood:	n/a	n/a
22	POLR2A	chr14:71107423-71110555	GM12892	blood:	n/a	n/a
23	POLR2A	chr14:71108929-71110056	H1-neurons	neurons:	n/a	n/a
24	CHD1	chr14:71108979-71110082	H1-hESC	embryonic stem cell:	n/a	n/a
25	GATA2	chr14:71109205-71110074	SH-SY5Y	brain:	n/a	n/a
26	CHD1	chr14:71108999-71110697	GM12878	blood:	n/a	n/a
27	POLR2A	chr14:71107131-71110993	Raji	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71086221..71087894-chr14:71109543..71111323,2	MCF-7	breast:
2	chr14:71109389..71111016-chr14:71129736..71132457,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259115	TF binding region
ENSG00000245466	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55945353	1.00[AMR][1000 genomes]
rs74062760	1.00[AMR][1000 genomes]
rs74063320	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3409289	chr14:71107224-71110172	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71107200-71110200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr14:71107200-71111200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:71107200-71111400	Active TSS	H9 Cell Line	embryonic stem cell
4	chr14:71107400-71110200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:71107400-71110200	Active TSS	Psoas Muscle	Psoas
6	chr14:71107600-71110200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr14:71107600-71110400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
8	chr14:71107800-71110200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:71107800-71110200	Active TSS	HSMM	muscle
10	chr14:71107800-71110400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr14:71107800-71110800	Active TSS	GM12878-XiMat	blood
12	chr14:71107800-71111000	Active TSS	HSMMtube	muscle
13	chr14:71108000-71110200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
14	chr14:71108000-71110200	Active TSS	Gastric	stomach
15	chr14:71108000-71110400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
16	chr14:71108000-71110600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:71108000-71110600	Active TSS	Primary T cells from cord blood	blood
18	chr14:71108000-71110600	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr14:71108000-71110600	Active TSS	Hela-S3	cervix
20	chr14:71108000-71110800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
21	chr14:71108000-71111000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:71108200-71111400	Active TSS	Esophagus	oesophagus
23	chr14:71109000-71110200	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
24	chr14:71109000-71110600	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr14:71109000-71110800	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr14:71109000-71110800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr14:71109000-71111200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:71109200-71110600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr14:71109200-71110600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr14:71109200-71110600	Flanking Active TSS	HMEC	breast
31	chr14:71109200-71111000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:71109200-71111200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:71109400-71110200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:71109400-71110200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
35	chr14:71109400-71110400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:71109400-71110400	Bivalent/Poised TSS	Brain Angular Gyrus	brain
37	chr14:71109400-71110600	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr14:71109400-71110600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
39	chr14:71109400-71110600	Bivalent/Poised TSS	NHLF	lung
40	chr14:71109400-71110800	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr14:71109400-71110800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr14:71109400-71111000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr14:71109400-71111000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
44	chr14:71109400-71111400	Enhancers	Spleen	Spleen
45	chr14:71109600-71110400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:71109600-71110400	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr14:71109600-71110600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
48	chr14:71109600-71110800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
49	chr14:71109600-71110800	Flanking Active TSS	Thymus	Thymus
50	chr14:71109600-71111000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

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