Variant report

Variant	rs73286283
Chromosome Location	chr14:68593254-68593255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:68447444..68449258-chr14:68592719..68595682,2	MCF-7	breast:
2	chr14:68593167..68594853-chr14:68598126..68600168,2	MCF-7	breast:
3	chr14:68588139..68594823-chr14:68601028..68606199,6	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17105031	1.00[AFR][1000 genomes]
rs34766676	0.86[AFR][1000 genomes]
rs73286237	0.87[AFR][1000 genomes]
rs73286246	0.87[AFR][1000 genomes]
rs73288005	1.00[AFR][1000 genomes]
rs73288031	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68580600-68598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:68583600-68593800	Weak transcription	Stomach Mucosa	stomach
3	chr14:68590600-68593400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr14:68591000-68593400	Enhancers	Fetal Kidney	kidney
5	chr14:68591200-68595800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:68591600-68594200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:68591800-68593400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr14:68591800-68593400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:68591800-68593400	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr14:68591800-68593400	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:68591800-68594200	Enhancers	Fetal Stomach	stomach
12	chr14:68591800-68594600	Enhancers	Fetal Lung	lung
13	chr14:68592000-68593600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr14:68592000-68593600	Enhancers	Rectal Smooth Muscle	rectum
15	chr14:68592000-68594600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:68592000-68594800	Enhancers	Fetal Intestine Small	intestine
17	chr14:68592200-68593400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:68592200-68594200	Enhancers	Colon Smooth Muscle	Colon
19	chr14:68592200-68603000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:68592400-68597400	Weak transcription	Aorta	Aorta
21	chr14:68592400-68598600	Weak transcription	Fetal Muscle Leg	muscle
22	chr14:68592400-68598800	Weak transcription	Ovary	ovary
23	chr14:68592400-68602200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr14:68592400-68604600	Weak transcription	Psoas Muscle	Psoas
25	chr14:68592400-68606200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:68592600-68594200	Enhancers	A549	lung
27	chr14:68592800-68593400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr14:68592800-68593400	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr14:68592800-68598200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:68593000-68593600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr14:68593000-68593600	Enhancers	Stomach Smooth Muscle	stomach
32	chr14:68593000-68594200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr14:68593000-68594400	Enhancers	Duodenum Mucosa	Duodenum
34	chr14:68593000-68598800	Weak transcription	NH-A	brain
35	chr14:68593200-68593400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
36	chr14:68593200-68593400	Enhancers	Placenta Amnion	Placenta Amnion
37	chr14:68593200-68594200	Enhancers	Fetal Intestine Large	intestine

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