Variant report

Variant	rs73287499
Chromosome Location	chr8:69751495-69751496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:69749429..69752254-chr8:69754411..69757216,3	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11985332	0.83[ASN][1000 genomes]
rs11992697	0.81[ASN][1000 genomes]
rs16935098	0.81[ASN][1000 genomes]
rs16935099	0.82[ASN][1000 genomes]
rs16935104	0.82[ASN][1000 genomes]
rs16935106	0.82[ASN][1000 genomes]
rs16935109	0.82[ASN][1000 genomes]
rs16935110	0.83[ASN][1000 genomes]
rs16935115	0.83[ASN][1000 genomes]
rs16935118	0.83[ASN][1000 genomes]
rs16935120	0.83[ASN][1000 genomes]
rs16935125	0.83[ASN][1000 genomes]
rs16935127	0.83[ASN][1000 genomes]
rs16935129	0.83[ASN][1000 genomes]
rs16935130	0.83[ASN][1000 genomes]
rs4737917	0.83[ASN][1000 genomes]
rs4737918	0.83[ASN][1000 genomes]
rs56844352	0.83[ASN][1000 genomes]
rs57718595	0.81[ASN][1000 genomes]
rs59015729	0.83[ASN][1000 genomes]
rs60911031	0.83[ASN][1000 genomes]
rs73285468	0.82[ASN][1000 genomes]
rs73287482	0.84[ASN][1000 genomes]
rs73287502	0.99[ASN][1000 genomes]
rs73289405	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7823491	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7841945	0.83[ASN][1000 genomes]
rs7842053	0.83[ASN][1000 genomes]
rs7842094	0.83[ASN][1000 genomes]
rs9643597	0.83[ASN][1000 genomes]
rs9643598	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1017131	chr8:69676989-69792515	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1031642	chr8:69728620-69814849	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033122	chr8:69728620-69843088	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1018791	chr8:69729491-69814849	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv470214	chr8:69745066-69814577	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv465704	chr8:69745066-69814578	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv611463	chr8:69745066-69814578	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69751200-69758600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr8:69751400-69751600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:69751400-69751600	Enhancers	Aorta	Aorta
4	chr8:69751400-69752600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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