Variant report

Variant	rs73290420
Chromosome Location	chr17:17351449-17351450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:17289655..17293959-chr17:17349314..17352438,5	MCF-7	breast:
2	chr17:17260627..17264124-chr17:17347628..17351557,3	MCF-7	breast:
3	chr17:17345336..17348353-chr17:17348575..17352300,3	K562	blood:
4	chr17:17344282..17356772-chr17:17394630..17405312,31	MCF-7	breast:
5	chr17:17342531..17346072-chr17:17347773..17351460,6	MCF-7	breast:
6	chr17:17296607..17299320-chr17:17351400..17353200,2	MCF-7	breast:
7	chr17:17335195..17342131-chr17:17347291..17351486,7	MCF-7	breast:
8	chr17:17340093..17354118-chr17:17394085..17402192,31	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108551	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs59919193	1.00[AMR][1000 genomes]
rs61057724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288501	1.00[AMR][1000 genomes]
rs73290416	1.00[AMR][1000 genomes]
rs73290417	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290423	1.00[AMR][1000 genomes]
rs73290437	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73292314	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065710	chr17:17328111-17391443	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17344800-17353400	Weak transcription	Brain Germinal Matrix	brain
2	chr17:17346800-17352200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:17348200-17351800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr17:17348400-17351600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr17:17348400-17352000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:17348600-17351600	Enhancers	NH-A	brain
7	chr17:17349200-17352200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr17:17349600-17363200	Weak transcription	Right Atrium	heart
9	chr17:17350000-17351800	Enhancers	HUVEC	blood vessel
10	chr17:17350400-17351600	Enhancers	Hela-S3	cervix
11	chr17:17350400-17353800	Weak transcription	Fetal Muscle Leg	muscle
12	chr17:17350400-17363400	Weak transcription	Gastric	stomach
13	chr17:17350600-17352200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:17350800-17351600	Enhancers	Osteobl	bone
15	chr17:17351000-17351600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:17351000-17351600	Enhancers	NHDF-Ad	bronchial
17	chr17:17351000-17353000	Enhancers	HepG2	liver
18	chr17:17351200-17351800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr17:17351200-17354400	Weak transcription	A549	lung
20	chr17:17351400-17351600	Enhancers	HSMM	muscle
21	chr17:17351400-17353600	Weak transcription	Spleen	Spleen
22	chr17:17351400-17353800	Weak transcription	Adipose Nuclei	Adipose
23	chr17:17351400-17354400	Weak transcription	Fetal Thymus	thymus

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