Variant report

Variant	rs73291567
Chromosome Location	chr14:39637027-39637028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39636723..39639312-chr14:39766672..39768267,2	MCF-7	breast:
2	chr14:39631838..39633415-chr14:39636342..39639514,3	MCF-7	breast:
3	chr14:39635717..39639064-chr14:39734944..39738287,4	MCF-7	breast:
4	chr14:39636108..39642775-chr14:39734196..39739360,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150527	Chromatin interaction
ENSG00000258940	Chromatin interaction
ENSG00000258941	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10133797	0.84[AFR][1000 genomes]
rs4143954	0.84[AFR][1000 genomes]
rs4902448	0.84[AFR][1000 genomes]
rs57653321	0.95[AFR][1000 genomes]
rs58851254	0.84[AFR][1000 genomes]
rs62640373	1.00[AFR][1000 genomes]
rs72673356	0.95[AFR][1000 genomes]
rs73289780	0.91[AFR][1000 genomes]
rs73289792	0.91[AFR][1000 genomes]
rs73289793	0.91[AFR][1000 genomes]
rs73291544	0.95[AFR][1000 genomes]
rs73291573	1.00[AFR][1000 genomes]
rs73291583	1.00[AFR][1000 genomes]
rs73291585	1.00[AFR][1000 genomes]
rs73291588	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1051247	chr14:39604035-39652789	Genic enhancers Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv1813567	chr14:39632114-39642840	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:39611000-39637600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:39611200-39638800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:39611400-39638000	Weak transcription	A549	lung
5	chr14:39612800-39637800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:39617600-39637800	Weak transcription	Psoas Muscle	Psoas
7	chr14:39617800-39637400	Weak transcription	K562	blood
8	chr14:39619600-39637400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:39621000-39638400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:39624400-39638000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:39626800-39637600	Weak transcription	Fetal Heart	heart
12	chr14:39626800-39637800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:39627000-39637200	Weak transcription	Brain Angular Gyrus	brain
14	chr14:39627000-39637400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr14:39627000-39637600	Weak transcription	HSMMtube	muscle
16	chr14:39627000-39637800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:39627000-39637800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:39627000-39638800	Weak transcription	Gastric	stomach
19	chr14:39627200-39638600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr14:39628200-39637600	Weak transcription	NHDF-Ad	bronchial
21	chr14:39631200-39637400	Weak transcription	HUVEC	blood vessel
22	chr14:39631600-39637200	Weak transcription	Ovary	ovary
23	chr14:39631600-39637400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:39631600-39638600	Weak transcription	Esophagus	oesophagus
25	chr14:39631800-39637400	Weak transcription	Brain Substantia Nigra	brain
26	chr14:39631800-39637800	Weak transcription	Colonic Mucosa	Colon
27	chr14:39631800-39638600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr14:39632000-39637600	Weak transcription	Primary B cells from cord blood	blood
29	chr14:39632200-39637200	Weak transcription	Adipose Nuclei	Adipose
30	chr14:39632200-39637400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:39632200-39637400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr14:39632200-39637400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr14:39632200-39637400	Weak transcription	NHLF	lung
34	chr14:39632200-39637600	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr14:39632200-39637600	Weak transcription	Brain Anterior Caudate	brain
36	chr14:39632200-39637600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:39632200-39637800	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr14:39632200-39637800	Weak transcription	NH-A	brain
39	chr14:39632200-39638000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr14:39632200-39638600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr14:39632200-39638600	Weak transcription	Pancreas	Pancrea
42	chr14:39632400-39637400	Weak transcription	Brain Hippocampus Middle	brain
43	chr14:39632400-39637800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr14:39632400-39638600	Weak transcription	Lung	lung
45	chr14:39632800-39637600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:39633000-39637400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr14:39633000-39638000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr14:39633200-39637800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr14:39633400-39637400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr14:39633400-39637400	Weak transcription	HMEC	breast

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