Variant report

Variant	rs73292019
Chromosome Location	chr7:12811539-12811540
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:12805050..12807862-chr7:12810613..12813616,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73306355	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv830907	chr7:12661239-12818250	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv830908	chr7:12695007-12870475	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	esv2422346	chr7:12739291-12883550	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv2763623	chr7:12777205-12813460	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv464381	chr7:12777308-12826398	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv470077	chr7:12777308-12826398	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	nsv606234	chr7:12777308-12826398	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	nsv606236	chr7:12791487-12846898	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12807800-12811600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr7:12808000-12811600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:12808000-12812000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr7:12808400-12811800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr7:12808600-12811600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:12808600-12812200	Enhancers	Fetal Stomach	stomach
7	chr7:12808800-12811800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:12809200-12811800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:12809400-12811600	Enhancers	Liver	Liver
10	chr7:12809600-12811800	Enhancers	Fetal Lung	lung
11	chr7:12809800-12811600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr7:12810200-12811600	Flanking Active TSS	HUVEC	blood vessel
13	chr7:12810400-12811800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr7:12810600-12811600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:12810800-12811600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:12810800-12811600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:12810800-12811600	Flanking Active TSS	Adipose Nuclei	Adipose
18	chr7:12810800-12811600	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr7:12810800-12811600	Active TSS	Right Atrium	heart
20	chr7:12810800-12811600	Flanking Active TSS	Hela-S3	cervix
21	chr7:12810800-12811600	Flanking Active TSS	Osteobl	bone
22	chr7:12810800-12812400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr7:12811000-12811600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr7:12811000-12811600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr7:12811000-12811600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
26	chr7:12811000-12811600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:12811000-12811600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:12811000-12811600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr7:12811000-12811600	Flanking Active TSS	K562	blood
30	chr7:12811000-12811600	Flanking Active TSS	NHDF-Ad	bronchial
31	chr7:12811200-12811600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:12811200-12811600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:12811200-12811600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:12811200-12811600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr7:12811200-12811600	Flanking Active TSS	Brain Germinal Matrix	brain
36	chr7:12811200-12811600	Flanking Active TSS	Colon Smooth Muscle	Colon
37	chr7:12811200-12811600	Flanking Active TSS	Fetal Brain Male	brain
38	chr7:12811200-12811600	Flanking Active TSS	Fetal Brain Female	brain
39	chr7:12811200-12811600	Flanking Active TSS	Fetal Kidney	kidney
40	chr7:12811200-12811600	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr7:12811200-12811600	Active TSS	Stomach Smooth Muscle	stomach
42	chr7:12811200-12811600	Flanking Active TSS	NH-A	brain
43	chr7:12811200-12811800	Enhancers	Fetal Intestine Small	intestine
44	chr7:12811200-12812400	Enhancers	Fetal Muscle Leg	muscle
45	chr7:12811400-12811600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr7:12811400-12811600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:12811400-12811600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:12811400-12811600	Enhancers	Brain Angular Gyrus	brain
49	chr7:12811400-12811600	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr7:12811400-12811600	Enhancers	Rectal Smooth Muscle	rectum

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