Variant report

Variant	rs73292992
Chromosome Location	chr12:26352689-26352690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:26351932..26353436-chr12:26357817..26360004,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12318384	0.86[EUR][1000 genomes]
rs16930324	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56871073	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58395664	1.00[EUR][1000 genomes]
rs60530440	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73292995	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73295005	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv648	chr12:26330291-26375186	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26349600-26358000	Weak transcription	Fetal Intestine Small	intestine
2	chr12:26349800-26356600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:26349800-26357400	Weak transcription	Ovary	ovary
4	chr12:26349800-26358000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:26350000-26352800	Enhancers	Colon Smooth Muscle	Colon
6	chr12:26350000-26353600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:26350200-26353200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr12:26350600-26352800	Enhancers	NHDF-Ad	bronchial
9	chr12:26350600-26357600	Weak transcription	NHLF	lung
10	chr12:26351000-26355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:26351000-26357800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr12:26351200-26353000	Enhancers	Rectal Smooth Muscle	rectum
13	chr12:26351200-26355800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr12:26351200-26357400	Weak transcription	Right Ventricle	heart
15	chr12:26351400-26352800	Enhancers	Brain Anterior Caudate	brain
16	chr12:26351400-26353200	Enhancers	Brain Substantia Nigra	brain
17	chr12:26351400-26353600	Weak transcription	Brain Angular Gyrus	brain
18	chr12:26351400-26358000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr12:26351600-26356600	Weak transcription	Aorta	Aorta
20	chr12:26351800-26352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr12:26352000-26353000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr12:26352000-26356600	Weak transcription	Fetal Muscle Leg	muscle
23	chr12:26352000-26357400	Weak transcription	Left Ventricle	heart
24	chr12:26352000-26357800	Weak transcription	Small Intestine	intestine
25	chr12:26352000-26358000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr12:26352200-26356600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr12:26352200-26357800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr12:26352200-26365200	Weak transcription	HSMMtube	muscle
29	chr12:26352400-26355000	Weak transcription	HSMM	muscle
30	chr12:26352400-26356600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr12:26352400-26357000	Weak transcription	Brain Hippocampus Middle	brain
32	chr12:26352600-26355200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr12:26352600-26355400	Weak transcription	Fetal Heart	heart
34	chr12:26352600-26357000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr12:26352600-26357600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr12:26352600-26358000	Weak transcription	Osteobl	bone

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