Variant report
| Variant | rs73293251 |
|---|---|
| Chromosome Location | chr8:105483732-105483733 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CTCF | chr8:105483640-105483790 | Hela-S3 | cervix: | n/a | n/a |
| 2 | CTCF | chr8:105483640-105483790 | MCF-7 | breast: | n/a | n/a |
| 3 | RAD21 | chr8:105483730-105483874 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | CTCF | chr8:105483720-105483870 | HEK293 | kidney: | n/a | n/a |
| 5 | CTCF | chr8:105483680-105483830 | MCF-7 | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:105483550..105485713-chr8:105489213..105491392,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DPYS | TF binding region |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs35657080 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56981817 | 1.00[AMR][1000 genomes] |
| rs57223449 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57732538 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57852403 | 1.00[AMR][1000 genomes] |
| rs61265653 | 1.00[AMR][1000 genomes] |
| rs73295186 | 1.00[AMR][1000 genomes] |
| rs73295191 | 1.00[AMR][1000 genomes] |
| rs73297183 | 1.00[AMR][1000 genomes] |
| rs73297190 | 1.00[AMR][1000 genomes] |
| rs73299109 | 1.00[AMR][1000 genomes] |
| rs73299155 | 1.00[AMR][1000 genomes] |
| rs73299164 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016087 | chr8:105228670-105934368 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026754 | chr8:105382508-106030916 | Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv539709 | chr8:105382508-106030916 | Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 4 | nsv831417 | chr8:105455814-105625608 | Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:105483600-105485600 | Enhancers | Liver | Liver |
