Variant report

Variant	rs73294627
Chromosome Location	chr10:50092133-50092134
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs58147458	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60629772	0.85[AFR][1000 genomes]
rs73294614	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294617	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294622	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294624	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294632	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294637	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73294649	0.87[AFR][1000 genomes]
rs73294651	1.00[AMR][1000 genomes]
rs73294666	0.84[AFR][1000 genomes]
rs73294680	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50072800-50126200	Strong transcription	Primary B cells from peripheral blood	blood
2	chr10:50074200-50107000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:50074600-50093200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:50074600-50129600	Strong transcription	Primary B cells from cord blood	blood
5	chr10:50075200-50093600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr10:50075400-50126000	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr10:50086800-50098200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:50088000-50109400	Weak transcription	Right Atrium	heart
9	chr10:50090000-50094600	Strong transcription	Primary hematopoietic stem cells	blood
10	chr10:50090800-50098000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:50091200-50098000	Weak transcription	Spleen	Spleen
12	chr10:50091800-50092400	Enhancers	Fetal Brain Male	brain
13	chr10:50091800-50096600	Weak transcription	GM12878-XiMat	blood
14	chr10:50092000-50092600	Enhancers	Primary T cells from cord blood	blood
15	chr10:50092000-50097400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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