Variant report
| Variant | rs73295162 |
|---|---|
| Chromosome Location | chr12:48324118-48324119 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000111424 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs11168301 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168312 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11168322 | 0.96[AFR][1000 genomes] |
| rs11574003 | 1.00[AMR][1000 genomes] |
| rs12313409 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12314051 | 0.81[AFR][1000 genomes] |
| rs12318019 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12318615 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12322214 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58051519 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59128492 | 0.80[AFR][1000 genomes] |
| rs59608701 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60757377 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73295130 | 0.81[AFR][1000 genomes] |
| rs73295132 | 0.81[AFR][1000 genomes] |
| rs73295134 | 0.81[AFR][1000 genomes] |
| rs74086589 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv428589 | chr12:48282920-48341192 | Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48323400-48324200 | Bivalent Enhancer | Duodenum Mucosa | Duodenum |
