Variant report

Variant	rs73295836
Chromosome Location	chr17:19726897-19726898
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs59263276	0.84[AFR][1000 genomes]
rs60093219	0.84[AFR][1000 genomes]
rs60693525	0.94[AFR][1000 genomes]
rs62636609	0.94[AFR][1000 genomes]
rs7221728	1.00[AFR][1000 genomes]
rs7222910	0.94[AFR][1000 genomes]
rs73295805	0.87[AFR][1000 genomes]
rs73295819	1.00[AFR][1000 genomes]
rs73295824	0.84[AFR][1000 genomes]
rs73295842	0.84[AFR][1000 genomes]
rs73295848	1.00[AFR][1000 genomes]
rs73295864	1.00[AFR][1000 genomes]
rs73295879	1.00[AFR][1000 genomes]
rs73295882	1.00[AFR][1000 genomes]
rs73312743	0.94[AFR][1000 genomes]
rs8073641	0.89[AFR][1000 genomes]
rs8078025	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv1063892	chr17:19564634-19808485	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv482398	chr17:19673458-19808039	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1057469	chr17:19696714-19787062	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19673800-19769800	Weak transcription	NH-A	brain
2	chr17:19700200-19727000	Weak transcription	Right Ventricle	heart
3	chr17:19700400-19745200	Weak transcription	Stomach Mucosa	stomach
4	chr17:19700400-19768400	Weak transcription	Fetal Heart	heart
5	chr17:19700800-19769800	Weak transcription	HSMMtube	muscle
6	chr17:19701000-19727000	Weak transcription	Thymus	Thymus
7	chr17:19701000-19728000	Weak transcription	HUVEC	blood vessel
8	chr17:19701000-19728200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr17:19701000-19732400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr17:19701000-19743200	Weak transcription	Gastric	stomach
11	chr17:19701000-19743400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr17:19701000-19748600	Weak transcription	Spleen	Spleen
13	chr17:19701000-19753400	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr17:19701000-19766200	Weak transcription	Primary B cells from cord blood	blood
15	chr17:19701000-19770000	Weak transcription	Colonic Mucosa	Colon
16	chr17:19701200-19758400	Weak transcription	Small Intestine	intestine
17	chr17:19701800-19742800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr17:19703800-19727000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr17:19703800-19769800	Weak transcription	Psoas Muscle	Psoas
20	chr17:19704400-19754800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr17:19704400-19770000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:19705200-19733200	Weak transcription	HMEC	breast
23	chr17:19706800-19769800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:19710000-19729000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr17:19712400-19730000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:19712400-19769800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr17:19712600-19742400	Weak transcription	Fetal Kidney	kidney
28	chr17:19712600-19748400	Weak transcription	Fetal Brain Male	brain
29	chr17:19715400-19729200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr17:19716400-19737000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr17:19717200-19736000	Strong transcription	Adipose Nuclei	Adipose
32	chr17:19717800-19728600	Strong transcription	Primary T cells from cord blood	blood
33	chr17:19717800-19729000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr17:19717800-19729000	Strong transcription	Fetal Intestine Large	intestine
35	chr17:19718000-19729000	Strong transcription	Fetal Muscle Trunk	muscle
36	chr17:19718600-19729000	Strong transcription	Fetal Brain Female	brain
37	chr17:19719600-19728800	Strong transcription	Brain Anterior Caudate	brain
38	chr17:19719600-19729800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr17:19720800-19729200	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr17:19721200-19729000	Strong transcription	Fetal Muscle Leg	muscle
41	chr17:19721200-19729400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr17:19721200-19729400	Strong transcription	Fetal Stomach	stomach
43	chr17:19722800-19730600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr17:19723200-19727200	Weak transcription	Brain Angular Gyrus	brain
45	chr17:19723800-19728800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr17:19724200-19749400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr17:19724400-19727600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:19724800-19727800	Strong transcription	Fetal Intestine Small	intestine
49	chr17:19724800-19729000	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr17:19725200-19729000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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