Variant report

Variant	rs73298939
Chromosome Location	chr20:22473023-22473024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11905193	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11905267	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35509795	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6113682	1.00[AMR][1000 genomes]
rs73298944	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298945	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298956	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73298965	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22471200-22473600	Enhancers	Liver	Liver
3	chr20:22471200-22473600	Enhancers	Stomach Mucosa	stomach
4	chr20:22471400-22475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr20:22471800-22475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr20:22472000-22473200	Weak transcription	Pancreas	Pancrea
7	chr20:22472000-22475400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr20:22472000-22475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr20:22472200-22473400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr20:22472200-22473800	Enhancers	A549	lung
11	chr20:22472200-22474000	Enhancers	HepG2	liver
12	chr20:22472200-22480000	Weak transcription	Fetal Intestine Large	intestine
13	chr20:22472600-22475000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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