Variant report

Variant	rs73299979
Chromosome Location	chr8:92026281-92026282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr8:92026209-92026409	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91996938..91999549-chr8:92024709..92027668,2	K562	blood:
2	chr8:92023345..92024869-chr8:92025995..92028632,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253358	TF binding region
ENSG00000253250	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10490979	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1060583	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11989738	0.82[EUR][1000 genomes]
rs11994240	0.82[EUR][1000 genomes]
rs16905862	0.82[EUR][1000 genomes]
rs16906071	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16907242	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34503257	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645524	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55999403	0.89[EUR][1000 genomes]
rs56871170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58183914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58624537	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58807337	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59695689	0.86[EUR][1000 genomes]
rs60121972	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471263	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6651175	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006863	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73298014	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73298068	0.82[EUR][1000 genomes]
rs73299912	0.84[EUR][1000 genomes]
rs73299915	0.82[EUR][1000 genomes]
rs73299920	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73299946	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73299965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73299977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73299981	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818979	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv891185	chr8:91923776-92056288	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv2758623	chr8:91974499-92273724	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	esv2759629	chr8:91974499-92273724	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	esv1851089	chr8:92006663-92038304	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91997800-92026400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:91998200-92026400	Weak transcription	HMEC	breast
3	chr8:91998200-92026800	Weak transcription	Ovary	ovary
4	chr8:91998200-92027000	Weak transcription	Brain Germinal Matrix	brain
5	chr8:91998200-92028800	Weak transcription	HSMMtube	muscle
6	chr8:91998200-92030200	Weak transcription	Aorta	Aorta
7	chr8:91998200-92030200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:91998400-92026400	Weak transcription	NH-A	brain
9	chr8:91998400-92026600	Weak transcription	Psoas Muscle	Psoas
10	chr8:91998400-92028800	Weak transcription	Fetal Brain Male	brain
11	chr8:91998400-92030200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr8:91998600-92026400	Weak transcription	Thymus	Thymus
13	chr8:91998600-92027200	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:91998600-92030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:91998600-92030200	Weak transcription	Fetal Stomach	stomach
16	chr8:91998600-92030200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:91998600-92030400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr8:92000200-92026600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:92000400-92026800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:92000400-92029000	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:92001000-92027400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr8:92001400-92027400	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:92001800-92026400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:92003800-92027200	Weak transcription	Fetal Kidney	kidney
25	chr8:92003800-92040200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr8:92004400-92027200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:92005600-92027400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr8:92008000-92028800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr8:92008600-92028600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr8:92009000-92027000	Weak transcription	Osteobl	bone
31	chr8:92009000-92030200	Weak transcription	Brain Angular Gyrus	brain
32	chr8:92009200-92028800	Weak transcription	Brain Anterior Caudate	brain
33	chr8:92011400-92027400	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr8:92012600-92026400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr8:92012600-92027400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr8:92012800-92027400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr8:92013400-92026600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr8:92013400-92027400	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr8:92013400-92030200	Weak transcription	Lung	lung
40	chr8:92013600-92026400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:92013600-92027400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr8:92014000-92026400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr8:92014600-92027400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr8:92014600-92033000	Weak transcription	Fetal Intestine Small	intestine
45	chr8:92014800-92027200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr8:92014800-92032400	Weak transcription	Spleen	Spleen
47	chr8:92015000-92027400	Weak transcription	Brain Hippocampus Middle	brain
48	chr8:92015400-92026400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr8:92015800-92052200	Weak transcription	Pancreas	Pancrea
50	chr8:92016200-92027400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links