Variant report

Variant	rs73301902
Chromosome Location	chr12:31803028-31803029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:31802156..31804673-chr12:31867168..31869979,2	K562	blood:

Variant related genes	Relation type
ENSG00000151743	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73301890	0.97[AFR][1000 genomes]
rs73301896	1.00[AFR][1000 genomes]
rs73301898	0.97[AFR][1000 genomes]
rs73303804	0.94[AFR][1000 genomes]
rs73303816	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv832365	chr12:31642811-31808532	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31798800-31803200	Weak transcription	HepG2	liver
2	chr12:31799200-31803400	Weak transcription	A549	lung
3	chr12:31799200-31811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr12:31799400-31803600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:31799600-31804400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr12:31800200-31803600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:31800200-31811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:31800400-31803200	Weak transcription	Ovary	ovary
9	chr12:31800400-31803600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:31800400-31803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr12:31800400-31803800	Weak transcription	Fetal Kidney	kidney
12	chr12:31800400-31805800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:31800400-31805800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:31800400-31811400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr12:31800600-31803600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr12:31800600-31805600	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr12:31800600-31805600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr12:31800600-31805600	Weak transcription	HMEC	breast
19	chr12:31800600-31805600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr12:31800600-31805800	Weak transcription	Primary B cells from cord blood	blood
21	chr12:31800600-31805800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:31800600-31805800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr12:31800600-31805800	Weak transcription	NHEK	skin
24	chr12:31800800-31805800	Weak transcription	Primary hematopoietic stem cells	blood
25	chr12:31802600-31804000	Enhancers	Placenta	Placenta
26	chr12:31802600-31805000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr12:31802800-31803800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr12:31802800-31804600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr12:31803000-31803200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:31803000-31803200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:31803000-31803400	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr12:31803000-31803600	Enhancers	Hela-S3	cervix
33	chr12:31803000-31804000	Enhancers	Fetal Intestine Large	intestine
34	chr12:31803000-31804400	Enhancers	Pancreas	Pancrea
35	chr12:31803000-31805200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr12:31803000-31805600	ZNF genes & repeats	Fetal Intestine Small	intestine

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