Variant report

Variant	rs7330305
Chromosome Location	chr13:51464735-51464736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51462818..51465395-chr13:51482325..51483926,2	K562	blood:

Variant related genes	Relation type
ENSG00000136104	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9568490	0.89[CHB][hapmap];0.87[CHD][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7330305	RNASEH2B	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51461200-51465200	Weak transcription	Aorta	Aorta
2	chr13:51461200-51465400	Enhancers	GM12878-XiMat	blood
3	chr13:51462000-51466200	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:51463400-51465600	Enhancers	Thymus	Thymus
5	chr13:51463400-51465800	Enhancers	Fetal Thymus	thymus
6	chr13:51463400-51466400	Enhancers	Primary B cells from peripheral blood	blood
7	chr13:51463600-51466000	Enhancers	Primary B cells from cord blood	blood
8	chr13:51463600-51466200	Enhancers	Primary T cells from cord blood	blood
9	chr13:51463600-51466200	Enhancers	Primary hematopoietic stem cells	blood
10	chr13:51463800-51467400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr13:51464200-51466000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr13:51464200-51466800	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr13:51464200-51466800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:51464400-51464800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr13:51464400-51466000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr13:51464400-51466200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr13:51464400-51466400	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr13:51464400-51467400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr13:51464600-51466000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr13:51464600-51466400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr13:51464600-51467000	Flanking Active TSS	Dnd41	blood

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