Variant report

Variant	rs73303471
Chromosome Location	chr5:145675281-145675282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2895653	1.00[AMR][1000 genomes]
rs59021359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73305210	1.00[AMR][1000 genomes]
rs73319938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428128	chr5:145503978-145682880	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv462478	chr5:145622472-145687295	Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv599937	chr5:145622472-145687295	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145649200-145676200	Weak transcription	Fetal Brain Male	brain
2	chr5:145657800-145676000	Weak transcription	Brain Substantia Nigra	brain
3	chr5:145666600-145677000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:145667000-145677400	Weak transcription	HUVEC	blood vessel
5	chr5:145667200-145675400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:145667400-145675400	Weak transcription	A549	lung
7	chr5:145669000-145681000	Weak transcription	HSMM	muscle
8	chr5:145674800-145675400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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