Variant report

Variant	rs73303586
Chromosome Location	chr14:77647114-77647115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr14:77646993-77648051	PBDE	blood:	n/a	n/a
2	MXI1	chr14:77647065-77649126	SK-N-SH	brain:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77640676..77643134-chr14:77646615..77650592,3	MCF-7	breast:
2	chr14:77646733..77650700-chr14:77767687..77771144,4	MCF-7	breast:
3	chr14:77646354..77648830-chr14:77666464..77668226,2	MCF-7	breast:
4	chr14:77646577..77649681-chr14:77786771..77790034,4	MCF-7	breast:
5	chr14:77644659..77647131-chr14:77754541..77756569,2	MCF-7	breast:
6	chr14:77642180..77644687-chr14:77647056..77649855,2	MCF-7	breast:
7	chr14:77646079..77647711-chr14:77656807..77658749,2	MCF-7	breast:
8	chr14:77639432..77641882-chr14:77645275..77647716,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
TMEM63C	TF binding region
ENSG00000009830	Chromatin interaction
ENSG00000165548	Chromatin interaction
ENSG00000258552	Chromatin interaction
ENSG00000100577	Chromatin interaction
ENSG00000201384	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1122180	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56877603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57930391	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58929764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60701738	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60710489	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61363370	0.88[AFR][1000 genomes]
rs73303563	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73303578	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307238	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73307242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309135	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73309138	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8003960	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv976845	chr14:77621865-77649191	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77625600-77647200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:77642600-77647400	Weak transcription	Fetal Brain Male	brain
3	chr14:77644600-77647400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:77645600-77648000	Weak transcription	Right Atrium	heart
5	chr14:77646400-77647600	Weak transcription	Spleen	Spleen
6	chr14:77647000-77648000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr14:77647000-77648000	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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