Variant report

Variant	rs73303823
Chromosome Location	chr12:31810449-31810450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:31476939..31478876-chr12:31810425..31813843,3	MCF-7	breast:
2	chr12:31809401..31811768-chr12:31881591..31883245,2	K562	blood:

Variant related genes	Relation type
ENSG00000139146	Chromatin interaction
ENSG00000177340	Chromatin interaction
ENSG00000151743	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56257104	1.00[AMR][1000 genomes]
rs57688887	1.00[AMR][1000 genomes]
rs73303808	1.00[AMR][1000 genomes]
rs73303820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760267	chr12:31626732-31909908	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv1043010	chr12:31798446-32143151	ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv541446	chr12:31798446-32143151	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv3432694	chr12:31801467-32109828	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv898966	chr12:31810126-31944985	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31799200-31811400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr12:31800200-31811600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:31800400-31811400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:31804000-31811600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr12:31804000-31811600	Weak transcription	Lung	lung
6	chr12:31806200-31811000	Weak transcription	Fetal Intestine Large	intestine
7	chr12:31806200-31811200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:31806200-31811400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr12:31806200-31811400	Weak transcription	Fetal Muscle Leg	muscle
10	chr12:31806400-31811200	Weak transcription	Fetal Kidney	kidney
11	chr12:31806400-31811400	Weak transcription	Primary B cells from cord blood	blood
12	chr12:31806600-31810800	Weak transcription	Fetal Intestine Small	intestine
13	chr12:31806600-31811000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr12:31806600-31811200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr12:31806600-31811200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr12:31806600-31811200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr12:31806600-31811200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr12:31806600-31811200	Weak transcription	Stomach Mucosa	stomach
19	chr12:31806600-31811200	Weak transcription	NHEK	skin
20	chr12:31806600-31811400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr12:31806600-31811400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr12:31806600-31811400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:31806600-31811400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr12:31806600-31811400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr12:31806600-31811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr12:31806600-31811400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr12:31806600-31811400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr12:31806600-31811400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr12:31806600-31811400	Weak transcription	Adipose Nuclei	Adipose
30	chr12:31806600-31811400	Weak transcription	Liver	Liver
31	chr12:31806600-31811400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr12:31806600-31811400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr12:31806600-31811400	Weak transcription	Fetal Lung	lung
34	chr12:31806600-31811400	Weak transcription	Fetal Stomach	stomach
35	chr12:31806600-31811400	Weak transcription	Thymus	Thymus
36	chr12:31806600-31811400	Weak transcription	HMEC	breast
37	chr12:31806600-31811400	Weak transcription	HSMM	muscle
38	chr12:31806600-31811400	Weak transcription	NHDF-Ad	bronchial
39	chr12:31806600-31811400	Weak transcription	Osteobl	bone
40	chr12:31806600-31811600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr12:31806600-31811600	Weak transcription	NHLF	lung
42	chr12:31806800-31811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr12:31806800-31811200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr12:31806800-31811200	Weak transcription	Dnd41	blood
45	chr12:31806800-31811400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr12:31806800-31811400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr12:31806800-31811400	Weak transcription	Primary B cells from peripheral blood	blood
48	chr12:31806800-31811400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr12:31806800-31811400	Weak transcription	Colonic Mucosa	Colon
50	chr12:31806800-31811400	Weak transcription	Fetal Thymus	thymus

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