Variant report

Variant	rs73303982
Chromosome Location	chr17:19845000-19845001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:19840864..19845443-chr17:19846835..19853734,12	MCF-7	breast:
2	chr17:19769581..19771974-chr17:19843282..19846506,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108599	Chromatin interaction
ENSG00000083290	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73296061	0.86[AFR][1000 genomes]
rs73296073	0.83[AFR][1000 genomes]
rs9652898	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062853	chr17:19547912-20206601	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv907868	chr17:19768924-20217122	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv907869	chr17:19795774-19926836	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv833394	chr17:19827714-19999577	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1060337	chr17:19828636-20204872	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv543257	chr17:19828636-20204872	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19802800-19846400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr17:19802800-19852400	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:19803000-19851800	Strong transcription	Fetal Thymus	thymus
4	chr17:19803600-19845400	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr17:19803600-19848000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr17:19804000-19853000	Strong transcription	Dnd41	blood
7	chr17:19806400-19846200	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:19812200-19845400	Strong transcription	Liver	Liver
9	chr17:19824800-19845800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr17:19825000-19845200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr17:19825200-19848400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:19825200-19851800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:19827600-19851600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr17:19827600-19852800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr17:19830600-19851200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr17:19831600-19851400	Strong transcription	Primary B cells from peripheral blood	blood
17	chr17:19832000-19845200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr17:19832000-19845400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr17:19836200-19845200	Strong transcription	Thymus	Thymus
20	chr17:19836600-19845200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:19837800-19846400	Strong transcription	Primary T cells from cord blood	blood
22	chr17:19838600-19851600	Weak transcription	Psoas Muscle	Psoas
23	chr17:19839800-19846000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr17:19839800-19849800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr17:19840000-19846200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr17:19840000-19846600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr17:19840000-19849400	Weak transcription	Colonic Mucosa	Colon
28	chr17:19840000-19851600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr17:19840000-19879200	Weak transcription	Fetal Brain Male	brain
30	chr17:19840200-19845600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr17:19840200-19848200	Weak transcription	K562	blood
32	chr17:19840400-19846600	Weak transcription	Brain Germinal Matrix	brain
33	chr17:19841200-19848200	Weak transcription	Fetal Brain Female	brain
34	chr17:19841600-19848600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:19841600-19852800	Strong transcription	Primary B cells from cord blood	blood
36	chr17:19841800-19851600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:19841800-19852600	Strong transcription	Fetal Intestine Large	intestine
38	chr17:19842000-19845200	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr17:19842000-19845200	Strong transcription	Left Ventricle	heart
40	chr17:19842000-19850000	Weak transcription	Gastric	stomach
41	chr17:19842000-19850000	Weak transcription	Pancreas	Pancrea
42	chr17:19842000-19852600	Strong transcription	Hela-S3	cervix
43	chr17:19842200-19845200	Strong transcription	Ovary	ovary
44	chr17:19842200-19846600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr17:19842400-19845200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:19842400-19846600	Weak transcription	Lung	lung
47	chr17:19842400-19850000	Weak transcription	Aorta	Aorta
48	chr17:19842400-19851800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr17:19842600-19845200	Strong transcription	Fetal Kidney	kidney
50	chr17:19842600-19845600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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