Variant report

Variant	rs73304757
Chromosome Location	chr5:124313595-124313596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73304749	0.86[AFR][1000 genomes]
rs73304759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304762	1.00[ASN][1000 genomes]
rs73304763	0.87[AFR][1000 genomes]
rs73782507	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv599657	chr5:124284253-124330522	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124308600-124314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:124310000-124314600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:124310400-124315000	Weak transcription	Primary B cells from cord blood	blood
4	chr5:124311200-124316400	Weak transcription	Pancreas	Pancrea
5	chr5:124311400-124314400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:124312400-124314800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:124312400-124316200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:124312600-124315200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr5:124313000-124313600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
10	chr5:124313000-124317200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:124313200-124314400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:124313200-124315400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links