Variant report

Variant	rs73304781
Chromosome Location	chr10:50372013-50372014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50350582..50352155-chr10:50369514..50372257,2	K562	blood:
2	chr10:50188936..50190031-chr10:50371953..50373337,3	K562	blood:
3	chr10:50321508..50325682-chr10:50370316..50373031,3	K562	blood:
4	chr10:50340460..50342159-chr10:50369270..50372220,2	K562	blood:
5	chr10:50186224..50189780-chr10:50370738..50372313,3	K562	blood:
6	chr10:50183053..50184790-chr10:50371419..50373904,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128815	Chromatin interaction
ENSG00000172538	Chromatin interaction
ENSG00000165633	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56678944	1.00[AMR][1000 genomes]
rs57192152	0.87[AMR][1000 genomes]
rs58468873	0.87[AMR][1000 genomes]
rs58989233	1.00[AMR][1000 genomes]
rs59250742	0.87[AMR][1000 genomes]
rs59481238	1.00[AMR][1000 genomes]
rs59598256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282422	0.87[AMR][1000 genomes]
rs60458886	1.00[AMR][1000 genomes]
rs61403024	0.87[AMR][1000 genomes]
rs7080920	0.87[AMR][1000 genomes]
rs73302775	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50359000-50382200	Weak transcription	Left Ventricle	heart
2	chr10:50359200-50375400	Weak transcription	Right Atrium	heart
3	chr10:50359400-50373400	Weak transcription	Right Ventricle	heart
4	chr10:50359400-50374000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr10:50362400-50380600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr10:50365400-50374800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:50365400-50374800	Weak transcription	Lung	lung
8	chr10:50366000-50373600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr10:50366200-50378200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:50366800-50372400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:50366800-50375400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:50367600-50376200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50367600-50384600	Weak transcription	Dnd41	blood
14	chr10:50368000-50375600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:50368200-50380800	Weak transcription	Esophagus	oesophagus
16	chr10:50368600-50372600	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:50369000-50377200	Weak transcription	Brain Angular Gyrus	brain
18	chr10:50369600-50372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:50369600-50372400	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:50369600-50380400	Weak transcription	Gastric	stomach
21	chr10:50369800-50372400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr10:50369800-50373200	Weak transcription	Adipose Nuclei	Adipose
23	chr10:50369800-50373600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:50370000-50372200	Weak transcription	Fetal Muscle Leg	muscle
25	chr10:50370000-50372400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:50370000-50375000	Weak transcription	Brain Substantia Nigra	brain
27	chr10:50370200-50373600	Genic enhancers	K562	blood
28	chr10:50370800-50372400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr10:50371000-50373200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr10:50371200-50372400	Enhancers	NHDF-Ad	bronchial
31	chr10:50371200-50372800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:50371400-50372400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr10:50371400-50372400	Enhancers	NH-A	brain
34	chr10:50371600-50372200	Enhancers	NHLF	lung
35	chr10:50371600-50372800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:50371600-50372800	Enhancers	HSMM	muscle
37	chr10:50371600-50373200	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr10:50371600-50373400	Weak transcription	Spleen	Spleen
39	chr10:50371600-50377200	Weak transcription	Primary B cells from cord blood	blood
40	chr10:50372000-50373000	Enhancers	Fetal Thymus	thymus
41	chr10:50372000-50384000	Weak transcription	Colonic Mucosa	Colon

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