Variant report

Variant	rs73306145
Chromosome Location	chr10:49930772-49930773
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:49926635..49928509-chr10:49930502..49932684,2	MCF-7	breast:
2	chr10:49929489..49931426-chr10:49940435..49943259,2	K562	blood:
3	chr10:49513635..49516627-chr10:49929396..49931830,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10857652	1.00[ASN][1000 genomes]
rs10857654	1.00[ASN][1000 genomes]
rs11101534	1.00[ASN][1000 genomes]
rs11813901	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12242220	1.00[ASN][1000 genomes]
rs12249626	1.00[ASN][1000 genomes]
rs12255772	1.00[ASN][1000 genomes]
rs12262698	1.00[ASN][1000 genomes]
rs12264297	1.00[ASN][1000 genomes]
rs12269697	1.00[ASN][1000 genomes]
rs12415234	1.00[ASN][1000 genomes]
rs12761517	1.00[ASN][1000 genomes]
rs12761826	1.00[ASN][1000 genomes]
rs12762875	1.00[ASN][1000 genomes]
rs12764790	1.00[ASN][1000 genomes]
rs12765593	1.00[ASN][1000 genomes]
rs12766490	1.00[ASN][1000 genomes]
rs12769580	1.00[ASN][1000 genomes]
rs12773666	1.00[ASN][1000 genomes]
rs12774147	1.00[ASN][1000 genomes]
rs12777007	1.00[ASN][1000 genomes]
rs12777759	1.00[ASN][1000 genomes]
rs12778556	1.00[ASN][1000 genomes]
rs12780156	1.00[ASN][1000 genomes]
rs17011329	1.00[ASN][1000 genomes]
rs17011373	1.00[ASN][1000 genomes]
rs17699605	1.00[ASN][1000 genomes]
rs17772255	1.00[ASN][1000 genomes]
rs1993984	1.00[ASN][1000 genomes]
rs2137915	1.00[ASN][1000 genomes]
rs2377657	1.00[ASN][1000 genomes]
rs34120130	1.00[ASN][1000 genomes]
rs34577893	1.00[ASN][1000 genomes]
rs34822196	1.00[ASN][1000 genomes]
rs34923764	1.00[ASN][1000 genomes]
rs35051407	1.00[ASN][1000 genomes]
rs35085842	1.00[ASN][1000 genomes]
rs35193987	1.00[ASN][1000 genomes]
rs35495091	1.00[ASN][1000 genomes]
rs35741253	1.00[ASN][1000 genomes]
rs35968275	1.00[ASN][1000 genomes]
rs4838647	1.00[ASN][1000 genomes]
rs61848060	1.00[ASN][1000 genomes]
rs61848068	1.00[ASN][1000 genomes]
rs61850380	1.00[ASN][1000 genomes]
rs71500255	1.00[ASN][1000 genomes]
rs73306148	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73306151	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv895373	chr10:49911737-49933488	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49922000-49933800	Weak transcription	Right Atrium	heart
2	chr10:49923400-49932400	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr10:49923400-49960200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr10:49923600-49939400	Weak transcription	Adipose Nuclei	Adipose
5	chr10:49924600-49930800	Strong transcription	Primary B cells from cord blood	blood
6	chr10:49924600-49933200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr10:49925200-49951600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr10:49926400-49953600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr10:49927800-49949600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr10:49927800-49953400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr10:49928000-49951600	Strong transcription	GM12878-XiMat	blood
12	chr10:49928200-49931600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr10:49928400-49953800	Strong transcription	Primary hematopoietic stem cells	blood
14	chr10:49929000-49931000	Enhancers	HepG2	liver
15	chr10:49929200-49931000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr10:49929400-49939200	Weak transcription	Lung	lung
17	chr10:49930600-49930800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:49930600-49930800	Enhancers	Fetal Intestine Small	intestine
19	chr10:49930600-49932600	Genic enhancers	Spleen	Spleen

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