Variant report

Variant	rs73306741
Chromosome Location	chr20:22739128-22739129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22737582..22739507-chr20:22742394..22744607,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57433215	1.00[AMR][1000 genomes]
rs73302790	1.00[AMR][1000 genomes]
rs73304740	1.00[AMR][1000 genomes]
rs73306729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73306733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061382	chr20:22706041-22763200	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv544213	chr20:22722740-22791150	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv528221	chr20:22732749-22767280	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22734800-22745200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr20:22736600-22739200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:22736600-22741200	Weak transcription	Esophagus	oesophagus
4	chr20:22736600-22741400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:22737600-22739400	Enhancers	HSMMtube	muscle
6	chr20:22737800-22739600	Enhancers	Aorta	Aorta
7	chr20:22737800-22740000	Enhancers	HSMM	muscle
8	chr20:22737800-22749000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr20:22738000-22739200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr20:22738000-22739400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:22738000-22739400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr20:22738000-22739400	Enhancers	NH-A	brain
13	chr20:22738000-22739600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr20:22738000-22739600	Enhancers	Fetal Muscle Leg	muscle
15	chr20:22738000-22739600	Enhancers	Placenta	Placenta
16	chr20:22738400-22739400	Enhancers	Dnd41	blood
17	chr20:22738600-22739200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr20:22738600-22739400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr20:22738600-22740800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr20:22738600-22743000	Weak transcription	A549	lung
21	chr20:22738800-22739400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr20:22739000-22739400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr20:22739000-22739600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr20:22739000-22740000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr20:22739000-22740600	Enhancers	HMEC	breast
26	chr20:22739000-22742800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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