Variant report

Variant	rs73307136
Chromosome Location	chr12:50939918-50939919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:50938363..50942077-chr12:50942741..50946423,3	MCF-7	breast:
2	chr12:50938291..50940532-chr12:50951166..50953064,2	MCF-7	breast:
3	chr12:50937236..50940218-chr12:50942824..50944458,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73307164	1.00[AMR][1000 genomes]
rs73307170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50920800-50962400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:50921000-50940200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr12:50927200-50957600	Weak transcription	Fetal Lung	lung
4	chr12:50927400-50944400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:50927400-50948800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr12:50927400-50951000	Weak transcription	Dnd41	blood
7	chr12:50927400-50961800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr12:50927600-50941600	Weak transcription	Pancreas	Pancrea
9	chr12:50927600-50950000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr12:50927600-50957200	Weak transcription	Spleen	Spleen
11	chr12:50927800-50947600	Weak transcription	Fetal Thymus	thymus
12	chr12:50927800-50961800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr12:50929200-50943800	Weak transcription	Placenta	Placenta
14	chr12:50930600-50948600	Weak transcription	Left Ventricle	heart
15	chr12:50932000-50945200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr12:50932000-50957800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr12:50932000-50958000	Weak transcription	Adipose Nuclei	Adipose
18	chr12:50932200-50948400	Weak transcription	Primary T cells from cord blood	blood
19	chr12:50932200-50948600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr12:50932200-50961800	Weak transcription	Right Ventricle	heart
21	chr12:50932400-50941600	Weak transcription	Colonic Mucosa	Colon
22	chr12:50932400-50944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr12:50932400-50949000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr12:50932800-50947600	Weak transcription	Primary B cells from peripheral blood	blood
25	chr12:50932800-50948200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr12:50933000-50952400	Weak transcription	Primary B cells from cord blood	blood
27	chr12:50933800-50940200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:50935800-50944600	Weak transcription	Esophagus	oesophagus
29	chr12:50935800-50948400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr12:50936600-50940200	Weak transcription	Brain Angular Gyrus	brain
31	chr12:50936600-50940800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr12:50936800-50962000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr12:50937000-50940200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr12:50937000-50940400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:50937000-50945400	Weak transcription	GM12878-XiMat	blood
36	chr12:50937800-50944000	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr12:50938000-50951200	Weak transcription	Fetal Stomach	stomach
38	chr12:50938400-50943200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr12:50938600-50941000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:50938600-50942000	Enhancers	Duodenum Mucosa	Duodenum
41	chr12:50938800-50940000	Enhancers	A549	lung
42	chr12:50938800-50940800	Enhancers	NHEK	skin
43	chr12:50938800-50941000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr12:50938800-50941000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:50938800-50941000	Enhancers	Hela-S3	cervix
46	chr12:50938800-50941000	Enhancers	HSMMtube	muscle
47	chr12:50938800-50942600	Enhancers	HepG2	liver
48	chr12:50938800-50945600	Enhancers	Liver	Liver
49	chr12:50939000-50940800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr12:50939000-50941000	Enhancers	Sigmoid Colon	Sigmoid Colon

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